Channel Extractor

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Job id: 2023.may26.046  

Channel Extractor – possible the most useful program here. The channel extractor can pull interesting channels out from a structure. For example, the exit tunnel from the ribosome, the internal cavity of GroEL and many others. Channel extractor works by calculating the shell volume (A) and then subtracts the solvent-excluded volume (B) from the shell volume (A) the resulting volume is the solvent volume (C). Next it only takes the solvent volume that is connected to a point specified by you.

'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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