3v Results for JobId '2017.apr10.841'

Run Information

PDB id: 4m88 
biological unit: no
use hetero atoms: no
allow public display: no
grid resolution: high
probestep: 0.2
minprobe: 1.3
pymol: True
waterpdb: True
maxprobe: 3.5



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Images of your surface at probe size: 1.300:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 45009 Å3
Surface area: 14115 Å2
Sphericity, Ψ: 0.43
Effective radius: 9.57 Å
Center of Mass: (6.4, -0.1, -7.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.500:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 47207 Å3
Surface area: 13161 Å2
Sphericity, Ψ: 0.48
Effective radius: 10.76 Å
Center of Mass: (6.4, -0.1, -7.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.700:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 46823 Å3
Surface area: 12371 Å2
Sphericity, Ψ: 0.51
Effective radius: 11.35 Å
Center of Mass: (6.4, -0.0, -7.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.900:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 47196 Å3
Surface area: 11889 Å2
Sphericity, Ψ: 0.53
Effective radius: 11.91 Å
Center of Mass: (8.4, -1.0, -9.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.100:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 48460 Å3
Surface area: 11308 Å2
Sphericity, Ψ: 0.57
Effective radius: 12.86 Å
Center of Mass: (8.4, -1.0, -9.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.300:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 48652 Å3
Surface area: 10920 Å2
Sphericity, Ψ: 0.59
Effective radius: 13.37 Å
Center of Mass: (6.4, -1.0, -7.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 50387 Å3
Surface area: 10698 Å2
Sphericity, Ψ: 0.62
Effective radius: 14.13 Å
Center of Mass: (6.5, -1.0, -7.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.700:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 49978 Å3
Surface area: 10376 Å2
Sphericity, Ψ: 0.63
Effective radius: 14.45 Å
Center of Mass: (6.5, -1.0, -7.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.900:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 50918 Å3
Surface area: 10299 Å2
Sphericity, Ψ: 0.65
Effective radius: 14.83 Å
Center of Mass: (6.5, -1.0, -7.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.100:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 51110 Å3
Surface area: 10091 Å2
Sphericity, Ψ: 0.66
Effective radius: 15.19 Å
Center of Mass: (6.5, -1.0, -7.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.300:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 51657 Å3
Surface area: 10083 Å2
Sphericity, Ψ: 0.67
Effective radius: 15.37 Å
Center of Mass: (6.5, 0.0, -7.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 52751 Å3
Surface area: 10033 Å2
Sphericity, Ψ: 0.68
Effective radius: 15.77 Å
Center of Mass: (6.5, 0.0, -7.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.700:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 52230 Å3
Surface area: 9878 Å2
Sphericity, Ψ: 0.68
Effective radius: 15.86 Å
Center of Mass: (6.5, -0.0, -7.0) Å

Downloadable files of your surface:



Downloadable files of your surface:

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Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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