3v Running Log for JobId '2017.may17.cd5'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=119.106.98.24 (Wed May 17 07:02:41 2017)
  • waiting for system load (6.71) to calm down, total wait time: 3 min 6 sec (Wed May 17 07:02:41 2017)
  • waiting for system load (6.21) to calm down, total wait time: 5 min 28 sec (Wed May 17 07:05:48 2017)
  • waiting for system load (7.39) to calm down, total wait time: 9 min 49 sec (Wed May 17 07:08:09 2017)
  • waiting for system load (8.12) to calm down, total wait time: 15 min 50 sec (Wed May 17 07:12:30 2017)
  • waiting for system load (8.05) to calm down, total wait time: 21 min 40 sec (Wed May 17 07:18:31 2017)
  • waiting for system load (7.99) to calm down, total wait time: 27 min 22 sec (Wed May 17 07:24:22 2017)
  • waiting for system load (7.81) to calm down, total wait time: 32 min 38 sec (Wed May 17 07:30:04 2017)
  • waiting for system load (7.73) to calm down, total wait time: 37 min 43 sec (Wed May 17 07:35:20 2017)
  • waiting for system load (7.95) to calm down, total wait time: 43 min 19 sec (Wed May 17 07:40:25 2017)
  • waiting for system load (7.75) to calm down, total wait time: 48 min 26 sec (Wed May 17 07:46:01 2017)
  • waiting for system load (7.52) to calm down, total wait time: 53 min 4 sec (Wed May 17 07:51:09 2017)
  • waiting for system load (7.51) to calm down, total wait time: 57 min 40 sec (Wed May 17 07:55:46 2017)
  • running now (Wed May 17 08:00:22 2017)
  • converting pdb into xyzr (Wed May 17 08:00:22 2017)
  • waiting for system load (7.51) to calm down, total wait time: 62 min 16 sec (Wed May 17 08:00:22 2017)
  • waiting for system load (7.97) to calm down, total wait time: 67 min 54 sec (Wed May 17 08:04:58 2017)
  • waiting for system load (7.51) to calm down, total wait time: 1 hr 13 min (Wed May 17 08:10:37 2017)
  • waiting for system load (7.69) to calm down, total wait time: 1 hr 17 min (Wed May 17 08:15:13 2017)
  • waiting for system load (8.14) to calm down, total wait time: 1 hr 24 min (Wed May 17 08:20:13 2017)
  • waiting for system load (7.92) to calm down, total wait time: 1 hr 29 min (Wed May 17 08:26:17 2017)
  • waiting for system load (7.19) to calm down, total wait time: 1 hr 33 min (Wed May 17 08:31:48 2017)
  • waiting for system load (7.19) to calm down, total wait time: 1 hr 37 min (Wed May 17 08:35:46 2017)
  • waiting for system load (7.25) to calm down, total wait time: 1 hr 41 min (Wed May 17 08:39:43 2017)
  • waiting for system load (8.31) to calm down, total wait time: 1 hr 48 min (Wed May 17 08:43:48 2017)
  • waiting for system load (7.46) to calm down, total wait time: 1 hr 52 min (Wed May 17 08:50:18 2017)
  • running now (Wed May 17 08:54:48 2017)
  • completed conversion of PDB file: 2017.may17.cd5.pdb (size: 12k) (Wed May 17 08:54:49 2017)
  • converted 372 atoms of 372 atoms (Wed May 17 08:54:49 2017)
  • found 372 atoms in pdb (Wed May 17 08:54:49 2017)
  • waiting for system load (7.38) to calm down, total wait time: 1 hr 56 min (Wed May 17 08:54:49 2017)
  • waiting for system load (6.42) to calm down, total wait time: 1 hr 59 min (Wed May 17 08:59:09 2017)
  • waiting for system load (7.59) to calm down, total wait time: 2 hr 4 min (Wed May 17 09:01:48 2017)
  • waiting for system load (7.66) to calm down, total wait time: 2 hr 9 min (Wed May 17 09:06:35 2017)
  • waiting for system load (8.09) to calm down, total wait time: 2 hr 15 min (Wed May 17 09:11:30 2017)
  • waiting for system load (7.64) to calm down, total wait time: 2 hr 20 min (Wed May 17 09:17:27 2017)
  • waiting for system load (7.69) to calm down, total wait time: 2 hr 25 min (Wed May 17 09:22:20 2017)
  • waiting for system load (7.87) to calm down, total wait time: 2 hr 30 min (Wed May 17 09:27:19 2017)
  • waiting for system load (7.78) to calm down, total wait time: 2 hr 35 min (Wed May 17 09:32:44 2017)
  • waiting for system load (7.71) to calm down, total wait time: 2 hr 40 min (Wed May 17 09:37:56 2017)
  • waiting for system load (7.55) to calm down, total wait time: 2 hr 45 min (Wed May 17 09:42:58 2017)
  • waiting for system load (8.19) to calm down, total wait time: 2 hr 51 min (Wed May 17 09:47:39 2017)
  • running now (Wed May 17 09:53:51 2017)
  • running 3v volume program (Wed May 17 09:53:51 2017)
  • waiting for system load (7.30) to calm down, total wait time: 2 hr 55 min (Wed May 17 09:53:51 2017)
  • waiting for system load (6.86) to calm down, total wait time: 2 hr 59 min (Wed May 17 09:58:01 2017)
  • waiting for system load (6.32) to calm down, total wait time: 3 hr 1 min (Wed May 17 10:01:23 2017)
  • waiting for system load (6.32) to calm down, total wait time: 3 hr 4 min (Wed May 17 10:03:54 2017)
  • waiting for system load (6.37) to calm down, total wait time: 3 hr 6 min (Wed May 17 10:06:24 2017)
  • waiting for system load (6.23) to calm down, total wait time: 3 hr 9 min (Wed May 17 10:09:00 2017)
  • waiting for system load (5.27) to calm down, total wait time: 3 hr 10 min (Wed May 17 10:11:23 2017)
  • waiting for system load (6.10) to calm down, total wait time: 3 hr 12 min (Wed May 17 10:12:41 2017)
  • waiting for system load (6.14) to calm down, total wait time: 3 hr 14 min (Wed May 17 10:14:54 2017)
  • running now (Wed May 17 10:17:10 2017)
  • waiting for system load (5.98) to calm down, total wait time: 3 hr 16 min (Wed May 17 10:17:11 2017)
  • waiting for system load (5.38) to calm down, total wait time: 3 hr 18 min (Wed May 17 10:19:15 2017)
  • waiting for system load (5.68) to calm down, total wait time: 3 hr 20 min (Wed May 17 10:20:39 2017)
  • waiting for system load (5.20) to calm down, total wait time: 3 hr 21 min (Wed May 17 10:22:22 2017)
  • waiting for system load (4.60) to calm down, total wait time: 3 hr 22 min (Wed May 17 10:23:36 2017)
  • running now (Wed May 17 10:24:23 2017)
  • smoothing out volume (Wed May 17 10:24:23 2017)
  • waiting for system load (4.32) to calm down, total wait time: 3 hr 22 min (Wed May 17 10:24:23 2017)
  • waiting for system load (3.16) to calm down, total wait time: 3 hr 22 min (Wed May 17 10:25:00 2017)
  • running now (Wed May 17 10:25:10 2017)
  • imaging volume (download mrc) with UCSF Chimera (Wed May 17 10:25:10 2017)
  • UCSF Chimera created Jmol compatible file (Wed May 17 10:25:16 2017)
  • compressing 2017.may17.cd5.obj (Wed May 17 10:25:16 2017)
  • waiting for system load (2.91) to calm down, total wait time: 3 hr 22 min (Wed May 17 10:25:16 2017)
  • waiting for system load (2.85) to calm down, total wait time: 3 hr 23 min (Wed May 17 10:25:23 2017)
  • waiting for system load (3.10) to calm down, total wait time: 3 hr 23 min (Wed May 17 10:25:30 2017)
  • waiting for system load (3.55) to calm down, total wait time: 3 hr 23 min (Wed May 17 10:25:39 2017)
  • running now (Wed May 17 10:25:56 2017)
  • waiting for system load (3.65) to calm down, total wait time: 3 hr 23 min (Wed May 17 10:25:56 2017)
  • waiting for system load (3.75) to calm down, total wait time: 3 hr 24 min (Wed May 17 10:26:14 2017)
  • waiting for system load (5.08) to calm down, total wait time: 3 hr 25 min (Wed May 17 10:26:35 2017)
  • waiting for system load (4.83) to calm down, total wait time: 3 hr 26 min (Wed May 17 10:27:43 2017)
  • waiting for system load (4.47) to calm down, total wait time: 3 hr 26 min (Wed May 17 10:28:40 2017)
  • running now (Wed May 17 10:29:22 2017)
  • UCSF Chimera completed in 12 min 11 sec (Wed May 17 10:29:22 2017)
  • analyzing volume (Wed May 17 10:29:22 2017)
  • normal CoM (-0.2, -5.2, -2.3) Å (Wed May 17 10:29:22 2017)
  • reduced center failed (Wed May 17 10:29:22 2017)
  • volume analysis completed in 0.51 sec (Wed May 17 10:29:22 2017)
  • compressing 2017.may17.cd5.mrc (Wed May 17 10:29:22 2017)
  • waiting for system load (4.24) to calm down, total wait time: 3 hr 27 min (Wed May 17 10:29:22 2017)
  • waiting for system load (4.31) to calm down, total wait time: 3 hr 28 min (Wed May 17 10:29:57 2017)
  • waiting for system load (4.13) to calm down, total wait time: 3 hr 28 min (Wed May 17 10:30:33 2017)
  • running now (Wed May 17 10:31:04 2017)
  • waiting for system load (3.08) to calm down, total wait time: 3 hr 28 min (Wed May 17 10:31:04 2017)
  • waiting for system load (3.07) to calm down, total wait time: 3 hr 28 min (Wed May 17 10:31:13 2017)
  • waiting for system load (3.06) to calm down, total wait time: 3 hr 29 min (Wed May 17 10:31:22 2017)
  • running now (Wed May 17 10:31:31 2017)
  • FINISHED (Wed May 17 10:31:31 2017)

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Log file display

Show last lines of log file 
Terminal display
		
Message: waiting for system load (4.83) to calm down, total wait time: 3 hr 26 min 
Message: waiting for system load (4.47) to calm down, total wait time: 3 hr 26 min 
Message: running now 
Message: UCSF Chimera completed in 12 min 11 sec 
OBJFILE /var/www/html/3vee/output/2017/may17/cd5/2017.may17.cd5.obj.gz 
Message: analyzing volume 
Message: normal CoM (-0.2, -5.2, -2.3) Å 
Message: reduced center failed 
Message: volume analysis completed in 0.51 sec 
Message: compressing 2017.may17.cd5.mrc 
Message: waiting for system load (4.24) to calm down, total wait time: 3 hr 27 min 
Message: waiting for system load (4.31) to calm down, total wait time: 3 hr 28 min 
Message: waiting for system load (4.13) to calm down, total wait time: 3 hr 28 min 
Message: running now 
Message: waiting for system load (3.08) to calm down, total wait time: 3 hr 28 min 
Message: waiting for system load (3.07) to calm down, total wait time: 3 hr 28 min 
Message: waiting for system load (3.06) to calm down, total wait time: 3 hr 29 min 
Message: running now 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
Download source code
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If you find this useful or want more functionality please contact Neil <vossman77 [at] yahoo.com>
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