3v Running Log for JobId '2017.may17.ce4'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=159.92.238.206 (Wed May 17 12:00:00 2017)
  • waiting for system load (7.77) to calm down, total wait time: 5 min 10 sec (Wed May 17 12:00:00 2017)
  • waiting for system load (7.86) to calm down, total wait time: 10 min 33 sec (Wed May 17 12:05:11 2017)
  • waiting for system load (7.70) to calm down, total wait time: 15 min 34 sec (Wed May 17 12:10:34 2017)
  • waiting for system load (7.88) to calm down, total wait time: 20 min 60 sec (Wed May 17 12:15:35 2017)
  • waiting for system load (7.82) to calm down, total wait time: 26 min 17 sec (Wed May 17 12:21:00 2017)
  • waiting for system load (7.64) to calm down, total wait time: 31 min 10 sec (Wed May 17 12:26:18 2017)
  • waiting for system load (7.68) to calm down, total wait time: 36 min 8 sec (Wed May 17 12:31:11 2017)
  • waiting for system load (7.84) to calm down, total wait time: 41 min 28 sec (Wed May 17 12:36:09 2017)
  • waiting for system load (7.50) to calm down, total wait time: 46 min 3 sec (Wed May 17 12:41:29 2017)
  • waiting for system load (7.35) to calm down, total wait time: 50 min 19 sec (Wed May 17 12:46:04 2017)
  • waiting for system load (7.44) to calm down, total wait time: 54 min 46 sec (Wed May 17 12:50:20 2017)
  • waiting for system load (7.80) to calm down, total wait time: 60 min 1 sec (Wed May 17 12:54:48 2017)
  • running now (Wed May 17 13:00:02 2017)
  • converting pdb into xyzr (Wed May 17 13:00:02 2017)
  • waiting for system load (7.47) to calm down, total wait time: 64 min 32 sec (Wed May 17 13:00:02 2017)
  • waiting for system load (7.34) to calm down, total wait time: 68 min 47 sec (Wed May 17 13:04:33 2017)
  • waiting for system load (7.30) to calm down, total wait time: 1 hr 13 min (Wed May 17 13:08:48 2017)
  • waiting for system load (7.68) to calm down, total wait time: 1 hr 18 min (Wed May 17 13:12:59 2017)
  • waiting for system load (7.87) to calm down, total wait time: 1 hr 23 min (Wed May 17 13:17:57 2017)
  • waiting for system load (7.75) to calm down, total wait time: 1 hr 28 min (Wed May 17 13:23:21 2017)
  • waiting for system load (7.75) to calm down, total wait time: 1 hr 34 min (Wed May 17 13:28:29 2017)
  • waiting for system load (7.82) to calm down, total wait time: 1 hr 39 min (Wed May 17 13:33:37 2017)
  • waiting for system load (7.85) to calm down, total wait time: 1 hr 44 min (Wed May 17 13:38:54 2017)
  • waiting for system load (7.80) to calm down, total wait time: 1 hr 49 min (Wed May 17 13:44:16 2017)
  • waiting for system load (7.81) to calm down, total wait time: 1 hr 55 min (Wed May 17 13:49:31 2017)
  • running now (Wed May 17 13:54:47 2017)
  • completed conversion of PDB file: 2017.may17.ce4.pdb (size: 137k) (Wed May 17 13:54:54 2017)
  • converted 4368 atoms of 4368 atoms (Wed May 17 13:54:54 2017)
  • found 4368 atoms in pdb (Wed May 17 13:54:54 2017)
  • waiting for system load (7.47) to calm down, total wait time: 1 hr 59 min (Wed May 17 13:54:54 2017)
  • waiting for system load (8.07) to calm down, total wait time: 2 hr 5 min (Wed May 17 13:59:25 2017)
  • waiting for system load (7.94) to calm down, total wait time: 2 hr 11 min (Wed May 17 14:05:18 2017)
  • waiting for system load (7.75) to calm down, total wait time: 2 hr 16 min (Wed May 17 14:10:53 2017)
  • waiting for system load (8.05) to calm down, total wait time: 2 hr 22 min (Wed May 17 14:16:01 2017)
  • waiting for system load (7.43) to calm down, total wait time: 2 hr 26 min (Wed May 17 14:21:51 2017)
  • waiting for system load (6.66) to calm down, total wait time: 2 hr 29 min (Wed May 17 14:26:17 2017)
  • waiting for system load (6.62) to calm down, total wait time: 2 hr 32 min (Wed May 17 14:29:19 2017)
  • waiting for system load (6.30) to calm down, total wait time: 2 hr 35 min (Wed May 17 14:32:17 2017)
  • running now (Wed May 17 14:34:46 2017)
  • running 3v volume program (Wed May 17 14:34:46 2017)
  • waiting for system load (6.33) to calm down, total wait time: 2 hr 37 min (Wed May 17 14:34:46 2017)
  • waiting for system load (5.81) to calm down, total wait time: 2 hr 39 min (Wed May 17 14:37:17 2017)
  • waiting for system load (6.02) to calm down, total wait time: 2 hr 41 min (Wed May 17 14:39:09 2017)
  • waiting for system load (6.01) to calm down, total wait time: 2 hr 43 min (Wed May 17 14:41:15 2017)
  • waiting for system load (5.88) to calm down, total wait time: 2 hr 45 min (Wed May 17 14:43:21 2017)
  • waiting for system load (5.88) to calm down, total wait time: 2 hr 47 min (Wed May 17 14:45:18 2017)
  • waiting for system load (5.80) to calm down, total wait time: 2 hr 49 min (Wed May 17 14:47:14 2017)
  • waiting for system load (5.99) to calm down, total wait time: 2 hr 51 min (Wed May 17 14:49:05 2017)
  • running now (Wed May 17 14:51:09 2017)
  • waiting for system load (5.85) to calm down, total wait time: 2 hr 53 min (Wed May 17 14:51:11 2017)
  • waiting for system load (4.19) to calm down, total wait time: 2 hr 53 min (Wed May 17 14:53:05 2017)
  • waiting for system load (3.62) to calm down, total wait time: 2 hr 54 min (Wed May 17 14:53:38 2017)
  • waiting for system load (3.73) to calm down, total wait time: 2 hr 54 min (Wed May 17 14:53:56 2017)
  • running now (Wed May 17 14:54:16 2017)
  • smoothing out volume (Wed May 17 14:54:16 2017)
  • waiting for system load (3.80) to calm down, total wait time: 2 hr 54 min (Wed May 17 14:54:16 2017)
  • waiting for system load (3.86) to calm down, total wait time: 2 hr 55 min (Wed May 17 14:54:38 2017)
  • waiting for system load (3.91) to calm down, total wait time: 2 hr 55 min (Wed May 17 14:55:02 2017)
  • waiting for system load (4.01) to calm down, total wait time: 2 hr 56 min (Wed May 17 14:55:27 2017)
  • waiting for system load (4.01) to calm down, total wait time: 2 hr 56 min (Wed May 17 14:55:54 2017)
  • running now (Wed May 17 14:56:22 2017)
  • imaging volume (download mrc) with UCSF Chimera (Wed May 17 14:56:22 2017)
  • UCSF Chimera created Jmol compatible file (Wed May 17 14:56:38 2017)
  • compressing 2017.may17.ce4.obj (Wed May 17 14:56:38 2017)
  • waiting for system load (4.54) to calm down, total wait time: 2 hr 57 min (Wed May 17 14:56:38 2017)
  • waiting for system load (4.32) to calm down, total wait time: 2 hr 57 min (Wed May 17 14:57:23 2017)
  • waiting for system load (4.58) to calm down, total wait time: 2 hr 58 min (Wed May 17 14:58:00 2017)
  • waiting for system load (4.20) to calm down, total wait time: 2 hr 59 min (Wed May 17 14:58:46 2017)
  • running now (Wed May 17 14:59:19 2017)
  • waiting for system load (3.19) to calm down, total wait time: 2 hr 59 min (Wed May 17 14:59:19 2017)
  • waiting for system load (3.01) to calm down, total wait time: 2 hr 59 min (Wed May 17 14:59:29 2017)
  • waiting for system load (3.57) to calm down, total wait time: 2 hr 59 min (Wed May 17 14:59:38 2017)
  • waiting for system load (4.55) to calm down, total wait time: 3 hr 0 min (Wed May 17 14:59:55 2017)
  • waiting for system load (6.31) to calm down, total wait time: 3 hr 3 min (Wed May 17 15:00:39 2017)
  • running now (Wed May 17 15:03:09 2017)
  • UCSF Chimera completed in 11 min 59 sec (Wed May 17 15:03:10 2017)
  • analyzing volume (Wed May 17 15:03:10 2017)
  • normal CoM (-4.1, -2.8, 0.3) Å (Wed May 17 15:03:13 2017)
  • reduced center failed (Wed May 17 15:03:13 2017)
  • volume analysis completed in 2.68 sec (Wed May 17 15:03:13 2017)
  • compressing 2017.may17.ce4.mrc (Wed May 17 15:03:13 2017)
  • waiting for system load (4.49) to calm down, total wait time: 3 hr 3 min (Wed May 17 15:03:13 2017)
  • waiting for system load (4.86) to calm down, total wait time: 3 hr 4 min (Wed May 17 15:03:55 2017)
  • waiting for system load (5.00) to calm down, total wait time: 3 hr 5 min (Wed May 17 15:04:53 2017)
  • waiting for system load (4.51) to calm down, total wait time: 3 hr 6 min (Wed May 17 15:05:57 2017)
  • running now (Wed May 17 15:06:41 2017)
  • waiting for system load (3.62) to calm down, total wait time: 3 hr 6 min (Wed May 17 15:06:41 2017)
  • waiting for system load (3.79) to calm down, total wait time: 3 hr 7 min (Wed May 17 15:06:59 2017)
  • waiting for system load (3.85) to calm down, total wait time: 3 hr 7 min (Wed May 17 15:07:21 2017)
  • waiting for system load (3.90) to calm down, total wait time: 3 hr 8 min (Wed May 17 15:07:44 2017)
  • waiting for system load (4.08) to calm down, total wait time: 3 hr 8 min (Wed May 17 15:08:08 2017)
  • running now (Wed May 17 15:08:38 2017)
  • FINISHED (Wed May 17 15:08:38 2017)

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Log file display

Show last lines of log file 
Terminal display
		
Message: UCSF Chimera completed in 11 min 59 sec 
OBJFILE /var/www/html/3vee/output/2017/may17/ce4/2017.may17.ce4.obj.gz 
Message: analyzing volume 
Message: normal CoM (-4.1, -2.8, 0.3) Å 
Message: reduced center failed 
Message: volume analysis completed in 2.68 sec 
Message: compressing 2017.may17.ce4.mrc 
Message: waiting for system load (4.49) to calm down, total wait time: 3 hr 3 min 
Message: waiting for system load (4.86) to calm down, total wait time: 3 hr 4 min 
Message: waiting for system load (5.00) to calm down, total wait time: 3 hr 5 min 
Message: waiting for system load (4.51) to calm down, total wait time: 3 hr 6 min 
Message: running now 
Message: waiting for system load (3.62) to calm down, total wait time: 3 hr 6 min 
Message: waiting for system load (3.79) to calm down, total wait time: 3 hr 7 min 
Message: waiting for system load (3.85) to calm down, total wait time: 3 hr 7 min 
Message: waiting for system load (3.90) to calm down, total wait time: 3 hr 8 min 
Message: waiting for system load (4.08) to calm down, total wait time: 3 hr 8 min 
Message: running now 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
Download source code
Help
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If you find this useful or want more functionality please contact Neil <vossman77 [at] yahoo.com>
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