3v Running Log for JobId '2017.may18.7ea'

Program is still running, progress is shown below

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  • host ip address=129.255.229.90 (Thu May 18 20:25:44 2017)
  • waiting for system load (7.92) to calm down, total wait time: 5 min 31 sec (Thu May 18 20:25:44 2017)
  • waiting for system load (6.54) to calm down, total wait time: 8 min 22 sec (Thu May 18 20:31:15 2017)
  • waiting for system load (7.99) to calm down, total wait time: 14 min 3 sec (Thu May 18 20:34:06 2017)
  • waiting for system load (7.44) to calm down, total wait time: 18 min 30 sec (Thu May 18 20:39:47 2017)
  • waiting for system load (7.67) to calm down, total wait time: 23 min 27 sec (Thu May 18 20:44:15 2017)
  • waiting for system load (7.95) to calm down, total wait time: 29 min 3 sec (Thu May 18 20:49:12 2017)
  • waiting for system load (7.89) to calm down, total wait time: 34 min 30 sec (Thu May 18 20:54:48 2017)
  • waiting for system load (7.50) to calm down, total wait time: 39 min 5 sec (Thu May 18 21:00:15 2017)
  • waiting for system load (7.91) to calm down, total wait time: 44 min 35 sec (Thu May 18 21:04:50 2017)
  • waiting for system load (6.66) to calm down, total wait time: 47 min 36 sec (Thu May 18 21:10:20 2017)
  • waiting for system load (7.05) to calm down, total wait time: 51 min 18 sec (Thu May 18 21:13:21 2017)
  • running now (Thu May 18 21:17:03 2017)
  • converting pdb into xyzr (Thu May 18 21:17:03 2017)
  • waiting for system load (7.39) to calm down, total wait time: 55 min 39 sec (Thu May 18 21:17:03 2017)
  • waiting for system load (6.35) to calm down, total wait time: 58 min 12 sec (Thu May 18 21:21:24 2017)
  • waiting for system load (6.31) to calm down, total wait time: 60 min 42 sec (Thu May 18 21:23:57 2017)
  • waiting for system load (4.68) to calm down, total wait time: 61 min 32 sec (Thu May 18 21:26:27 2017)
  • waiting for system load (5.33) to calm down, total wait time: 62 min 53 sec (Thu May 18 21:27:17 2017)
  • waiting for system load (5.88) to calm down, total wait time: 64 min 50 sec (Thu May 18 21:28:39 2017)
  • waiting for system load (6.27) to calm down, total wait time: 67 min 16 sec (Thu May 18 21:30:35 2017)
  • running now (Thu May 18 21:33:02 2017)
  • completed conversion of PDB file: 2017.may18.7ea.pdb (size: 77k) (Thu May 18 21:33:03 2017)
  • converted 2477 atoms of 2477 atoms (Thu May 18 21:33:03 2017)
  • found 2477 atoms in pdb (Thu May 18 21:33:03 2017)
  • waiting for system load (5.40) to calm down, total wait time: 68 min 41 sec (Thu May 18 21:33:03 2017)
  • waiting for system load (5.42) to calm down, total wait time: 1 hr 10 min (Thu May 18 21:34:29 2017)
  • waiting for system load (5.94) to calm down, total wait time: 1 hr 12 min (Thu May 18 21:35:55 2017)
  • waiting for system load (5.98) to calm down, total wait time: 1 hr 14 min (Thu May 18 21:37:56 2017)
  • waiting for system load (4.92) to calm down, total wait time: 1 hr 15 min (Thu May 18 21:40:00 2017)
  • waiting for system load (4.81) to calm down, total wait time: 1 hr 16 min (Thu May 18 21:41:00 2017)
  • waiting for system load (5.39) to calm down, total wait time: 1 hr 18 min (Thu May 18 21:41:55 2017)
  • waiting for system load (5.88) to calm down, total wait time: 1 hr 19 min (Thu May 18 21:43:20 2017)
  • waiting for system load (6.06) to calm down, total wait time: 1 hr 22 min (Thu May 18 21:45:17 2017)
  • running now (Thu May 18 21:47:26 2017)
  • running 3v volume program (Thu May 18 21:47:26 2017)
  • waiting for system load (4.19) to calm down, total wait time: 1 hr 22 min (Thu May 18 21:47:26 2017)
  • waiting for system load (4.84) to calm down, total wait time: 1 hr 23 min (Thu May 18 21:47:59 2017)
  • waiting for system load (5.38) to calm down, total wait time: 1 hr 25 min (Thu May 18 21:48:56 2017)
  • waiting for system load (5.73) to calm down, total wait time: 1 hr 26 min (Thu May 18 21:50:20 2017)
  • waiting for system load (5.71) to calm down, total wait time: 1 hr 28 min (Thu May 18 21:52:06 2017)
  • running now (Thu May 18 21:53:51 2017)
  • waiting for system load (4.44) to calm down, total wait time: 1 hr 29 min (Thu May 18 21:53:52 2017)
  • waiting for system load (4.57) to calm down, total wait time: 1 hr 29 min (Thu May 18 21:54:33 2017)
  • waiting for system load (5.82) to calm down, total wait time: 1 hr 31 min (Thu May 18 21:55:18 2017)
  • waiting for system load (5.93) to calm down, total wait time: 1 hr 33 min (Thu May 18 21:57:11 2017)
  • waiting for system load (4.70) to calm down, total wait time: 1 hr 34 min (Thu May 18 21:59:11 2017)
  • running now (Thu May 18 22:00:01 2017)
  • smoothing out volume (Thu May 18 22:00:01 2017)
  • waiting for system load (3.37) to calm down, total wait time: 1 hr 34 min (Thu May 18 22:00:01 2017)
  • waiting for system load (3.06) to calm down, total wait time: 1 hr 35 min (Thu May 18 22:00:15 2017)
  • running now (Thu May 18 22:00:24 2017)
  • imaging volume (download mrc) with UCSF Chimera (Thu May 18 22:00:24 2017)
  • UCSF Chimera created Jmol compatible file (Thu May 18 22:00:35 2017)
  • compressing 2017.may18.7ea.obj (Thu May 18 22:00:35 2017)
  • waiting for system load (3.16) to calm down, total wait time: 1 hr 35 min (Thu May 18 22:00:35 2017)
  • waiting for system load (3.29) to calm down, total wait time: 1 hr 35 min (Thu May 18 22:00:45 2017)
  • waiting for system load (3.63) to calm down, total wait time: 1 hr 35 min (Thu May 18 22:00:57 2017)
  • waiting for system load (3.80) to calm down, total wait time: 1 hr 36 min (Thu May 18 22:01:15 2017)
  • running now (Thu May 18 22:01:37 2017)
  • waiting for system load (3.86) to calm down, total wait time: 1 hr 36 min (Thu May 18 22:01:37 2017)
  • waiting for system load (3.91) to calm down, total wait time: 1 hr 36 min (Thu May 18 22:02:01 2017)
  • waiting for system load (3.94) to calm down, total wait time: 1 hr 37 min (Thu May 18 22:02:26 2017)
  • waiting for system load (3.96) to calm down, total wait time: 1 hr 37 min (Thu May 18 22:02:51 2017)
  • waiting for system load (4.19) to calm down, total wait time: 1 hr 38 min (Thu May 18 22:03:17 2017)
  • running now (Thu May 18 22:03:50 2017)
  • UCSF Chimera completed in 9 min 58 sec (Thu May 18 22:03:50 2017)
  • analyzing volume (Thu May 18 22:03:50 2017)
  • normal CoM (-6.2, -0.6, 1.4) Å (Thu May 18 22:03:51 2017)
  • reduced center failed (Thu May 18 22:03:51 2017)
  • volume analysis completed in 1.04 sec (Thu May 18 22:03:51 2017)
  • compressing 2017.may18.7ea.mrc (Thu May 18 22:03:51 2017)
  • waiting for system load (3.53) to calm down, total wait time: 1 hr 38 min (Thu May 18 22:03:51 2017)
  • waiting for system load (3.27) to calm down, total wait time: 1 hr 38 min (Thu May 18 22:04:07 2017)
  • waiting for system load (3.29) to calm down, total wait time: 1 hr 38 min (Thu May 18 22:04:19 2017)
  • running now (Thu May 18 22:04:31 2017)
  • waiting for system load (3.25) to calm down, total wait time: 1 hr 39 min (Thu May 18 22:04:31 2017)
  • waiting for system load (3.21) to calm down, total wait time: 1 hr 39 min (Thu May 18 22:04:43 2017)
  • waiting for system load (3.16) to calm down, total wait time: 1 hr 39 min (Thu May 18 22:04:54 2017)
  • running now (Thu May 18 22:05:04 2017)
  • FINISHED (Thu May 18 22:05:04 2017)

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Log file display

Show last lines of log file 
Terminal display
		
Message: waiting for system load (3.96) to calm down, total wait time: 1 hr 37 min 
Message: waiting for system load (4.19) to calm down, total wait time: 1 hr 38 min 
Message: running now 
Message: UCSF Chimera completed in 9 min 58 sec 
OBJFILE /var/www/html/3vee/output/2017/may18/7ea/2017.may18.7ea.obj.gz 
Message: analyzing volume 
Message: normal CoM (-6.2, -0.6, 1.4) Å 
Message: reduced center failed 
Message: volume analysis completed in 1.04 sec 
Message: compressing 2017.may18.7ea.mrc 
Message: waiting for system load (3.53) to calm down, total wait time: 1 hr 38 min 
Message: waiting for system load (3.27) to calm down, total wait time: 1 hr 38 min 
Message: waiting for system load (3.29) to calm down, total wait time: 1 hr 38 min 
Message: running now 
Message: waiting for system load (3.25) to calm down, total wait time: 1 hr 39 min 
Message: waiting for system load (3.21) to calm down, total wait time: 1 hr 39 min 
Message: waiting for system load (3.16) to calm down, total wait time: 1 hr 39 min 
Message: running now 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
Download source code
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If you find this useful or want more functionality please contact Neil <vossman77 [at] yahoo.com>
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