3v Running Log for JobId '2017.may18.b67'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=169.229.121.205 (Thu May 18 04:14:24 2017)
  • waiting for system load (7.29) to calm down, total wait time: 4 min 9 sec (Thu May 18 04:14:25 2017)
  • waiting for system load (7.83) to calm down, total wait time: 9 min 28 sec (Thu May 18 04:18:34 2017)
  • waiting for system load (7.26) to calm down, total wait time: 13 min 33 sec (Thu May 18 04:23:53 2017)
  • waiting for system load (7.47) to calm down, total wait time: 18 min 4 sec (Thu May 18 04:27:58 2017)
  • waiting for system load (7.59) to calm down, total wait time: 22 min 50 sec (Thu May 18 04:32:29 2017)
  • waiting for system load (7.76) to calm down, total wait time: 27 min 59 sec (Thu May 18 04:37:15 2017)
  • waiting for system load (7.65) to calm down, total wait time: 32 min 54 sec (Thu May 18 04:42:25 2017)
  • waiting for system load (7.57) to calm down, total wait time: 37 min 37 sec (Thu May 18 04:47:19 2017)
  • waiting for system load (7.49) to calm down, total wait time: 42 min 11 sec (Thu May 18 04:52:03 2017)
  • waiting for system load (7.49) to calm down, total wait time: 46 min 44 sec (Thu May 18 04:56:36 2017)
  • waiting for system load (7.42) to calm down, total wait time: 51 min 9 sec (Thu May 18 05:01:10 2017)
  • waiting for system load (7.76) to calm down, total wait time: 56 min 18 sec (Thu May 18 05:05:35 2017)
  • running now (Thu May 18 05:10:44 2017)
  • converting pdb into xyzr (Thu May 18 05:10:44 2017)
  • waiting for system load (6.34) to calm down, total wait time: 58 min 50 sec (Thu May 18 05:10:44 2017)
  • waiting for system load (7.52) to calm down, total wait time: 63 min 27 sec (Thu May 18 05:13:16 2017)
  • waiting for system load (7.45) to calm down, total wait time: 67 min 56 sec (Thu May 18 05:17:54 2017)
  • waiting for system load (7.10) to calm down, total wait time: 1 hr 12 min (Thu May 18 05:22:22 2017)
  • waiting for system load (7.27) to calm down, total wait time: 1 hr 16 min (Thu May 18 05:26:09 2017)
  • waiting for system load (7.35) to calm down, total wait time: 1 hr 20 min (Thu May 18 05:30:16 2017)
  • waiting for system load (7.30) to calm down, total wait time: 1 hr 24 min (Thu May 18 05:34:32 2017)
  • waiting for system load (7.76) to calm down, total wait time: 1 hr 29 min (Thu May 18 05:38:43 2017)
  • waiting for system load (7.36) to calm down, total wait time: 1 hr 34 min (Thu May 18 05:43:52 2017)
  • waiting for system load (7.54) to calm down, total wait time: 1 hr 38 min (Thu May 18 05:48:09 2017)
  • waiting for system load (7.53) to calm down, total wait time: 1 hr 43 min (Thu May 18 05:52:49 2017)
  • waiting for system load (7.52) to calm down, total wait time: 1 hr 48 min (Thu May 18 05:57:28 2017)
  • running now (Thu May 18 06:02:05 2017)
  • completed conversion of PDB file: 2017.may18.b67.pdb (size: 2k) (Thu May 18 06:02:06 2017)
  • converted 65 atoms of 65 atoms (Thu May 18 06:02:06 2017)
  • found 65 atoms in pdb (Thu May 18 06:02:06 2017)
  • waiting for system load (7.72) to calm down, total wait time: 1 hr 53 min (Thu May 18 06:02:06 2017)
  • waiting for system load (7.11) to calm down, total wait time: 1 hr 56 min (Thu May 18 06:07:09 2017)
  • waiting for system load (7.50) to calm down, total wait time: 2 hr 1 min (Thu May 18 06:10:58 2017)
  • waiting for system load (7.40) to calm down, total wait time: 2 hr 5 min (Thu May 18 06:15:32 2017)
  • waiting for system load (7.51) to calm down, total wait time: 2 hr 10 min (Thu May 18 06:19:55 2017)
  • waiting for system load (8.04) to calm down, total wait time: 2 hr 16 min (Thu May 18 06:24:31 2017)
  • waiting for system load (7.14) to calm down, total wait time: 2 hr 20 min (Thu May 18 06:30:20 2017)
  • waiting for system load (7.74) to calm down, total wait time: 2 hr 25 min (Thu May 18 06:34:12 2017)
  • waiting for system load (7.95) to calm down, total wait time: 2 hr 30 min (Thu May 18 06:39:18 2017)
  • waiting for system load (7.85) to calm down, total wait time: 2 hr 36 min (Thu May 18 06:44:54 2017)
  • waiting for system load (7.76) to calm down, total wait time: 2 hr 41 min (Thu May 18 06:50:16 2017)
  • waiting for system load (7.70) to calm down, total wait time: 2 hr 46 min (Thu May 18 06:55:25 2017)
  • running now (Thu May 18 07:00:26 2017)
  • running 3v volume program (Thu May 18 07:00:26 2017)
  • waiting for system load (7.93) to calm down, total wait time: 2 hr 51 min (Thu May 18 07:00:26 2017)
  • waiting for system load (6.20) to calm down, total wait time: 2 hr 54 min (Thu May 18 07:05:59 2017)
  • waiting for system load (7.72) to calm down, total wait time: 2 hr 59 min (Thu May 18 07:08:20 2017)
  • waiting for system load (8.05) to calm down, total wait time: 3 hr 5 min (Thu May 18 07:13:23 2017)
  • waiting for system load (7.00) to calm down, total wait time: 3 hr 8 min (Thu May 18 07:19:14 2017)
  • waiting for system load (7.73) to calm down, total wait time: 3 hr 13 min (Thu May 18 07:22:50 2017)
  • waiting for system load (7.07) to calm down, total wait time: 3 hr 17 min (Thu May 18 07:27:55 2017)
  • waiting for system load (6.42) to calm down, total wait time: 3 hr 20 min (Thu May 18 07:31:39 2017)
  • waiting for system load (6.40) to calm down, total wait time: 3 hr 22 min (Thu May 18 07:34:18 2017)
  • running now (Thu May 18 07:36:56 2017)
  • waiting for system load (6.77) to calm down, total wait time: 3 hr 26 min (Thu May 18 07:36:58 2017)
  • waiting for system load (6.41) to calm down, total wait time: 3 hr 28 min (Thu May 18 07:40:11 2017)
  • waiting for system load (6.22) to calm down, total wait time: 3 hr 31 min (Thu May 18 07:42:49 2017)
  • waiting for system load (6.11) to calm down, total wait time: 3 hr 33 min (Thu May 18 07:45:12 2017)
  • waiting for system load (5.68) to calm down, total wait time: 3 hr 35 min (Thu May 18 07:47:25 2017)
  • waiting for system load (5.85) to calm down, total wait time: 3 hr 36 min (Thu May 18 07:49:08 2017)
  • waiting for system load (6.12) to calm down, total wait time: 3 hr 39 min (Thu May 18 07:51:02 2017)
  • waiting for system load (6.08) to calm down, total wait time: 3 hr 41 min (Thu May 18 07:53:17 2017)
  • waiting for system load (6.11) to calm down, total wait time: 3 hr 43 min (Thu May 18 07:55:28 2017)
  • running now (Thu May 18 07:57:42 2017)
  • smoothing out volume (Thu May 18 07:57:42 2017)
  • waiting for system load (5.90) to calm down, total wait time: 3 hr 45 min (Thu May 18 07:57:42 2017)
  • waiting for system load (5.95) to calm down, total wait time: 3 hr 47 min (Thu May 18 07:59:40 2017)
  • waiting for system load (6.16) to calm down, total wait time: 3 hr 49 min (Thu May 18 08:01:41 2017)
  • waiting for system load (5.72) to calm down, total wait time: 3 hr 51 min (Thu May 18 08:03:59 2017)
  • waiting for system load (5.90) to calm down, total wait time: 3 hr 53 min (Thu May 18 08:05:44 2017)
  • waiting for system load (5.29) to calm down, total wait time: 3 hr 54 min (Thu May 18 08:07:42 2017)
  • running now (Thu May 18 08:09:01 2017)
  • imaging volume (download mrc) with UCSF Chimera (Thu May 18 08:09:01 2017)
  • UCSF Chimera created Jmol compatible file (Thu May 18 08:09:08 2017)
  • compressing 2017.may18.b67.obj (Thu May 18 08:09:08 2017)
  • waiting for system load (4.54) to calm down, total wait time: 3 hr 55 min (Thu May 18 08:09:08 2017)
  • waiting for system load (4.30) to calm down, total wait time: 3 hr 56 min (Thu May 18 08:09:52 2017)
  • waiting for system load (4.21) to calm down, total wait time: 3 hr 56 min (Thu May 18 08:10:28 2017)
  • running now (Thu May 18 08:11:02 2017)
  • waiting for system load (3.48) to calm down, total wait time: 3 hr 57 min (Thu May 18 08:11:02 2017)
  • waiting for system load (3.32) to calm down, total wait time: 3 hr 57 min (Thu May 18 08:11:17 2017)
  • waiting for system load (3.47) to calm down, total wait time: 3 hr 57 min (Thu May 18 08:11:30 2017)
  • waiting for system load (3.59) to calm down, total wait time: 3 hr 57 min (Thu May 18 08:11:45 2017)
  • running now (Thu May 18 08:12:02 2017)
  • UCSF Chimera completed in 35 min 4 sec (Thu May 18 08:12:02 2017)
  • analyzing volume (Thu May 18 08:12:02 2017)
  • normal CoM (-1.0, -1.9, -0.4) Å (Thu May 18 08:12:03 2017)
  • reduced center failed (Thu May 18 08:12:03 2017)
  • volume analysis completed in 0.55 sec (Thu May 18 08:12:03 2017)
  • compressing 2017.may18.b67.mrc (Thu May 18 08:12:03 2017)
  • waiting for system load (3.75) to calm down, total wait time: 3 hr 58 min (Thu May 18 08:12:03 2017)
  • waiting for system load (4.06) to calm down, total wait time: 3 hr 58 min (Thu May 18 08:12:24 2017)
  • waiting for system load (4.10) to calm down, total wait time: 3 hr 59 min (Thu May 18 08:12:53 2017)
  • waiting for system load (4.13) to calm down, total wait time: 3 hr 59 min (Thu May 18 08:13:23 2017)
  • waiting for system load (4.44) to calm down, total wait time: 3 hr 60 min (Thu May 18 08:13:53 2017)
  • running now (Thu May 18 08:14:34 2017)
  • waiting for system load (4.22) to calm down, total wait time: 4 hr 0 min (Thu May 18 08:14:34 2017)
  • waiting for system load (4.21) to calm down, total wait time: 4 hr 1 min (Thu May 18 08:15:08 2017)
  • waiting for system load (4.31) to calm down, total wait time: 4 hr 2 min (Thu May 18 08:15:41 2017)
  • waiting for system load (4.41) to calm down, total wait time: 4 hr 2 min (Thu May 18 08:16:17 2017)
  • running now (Thu May 18 08:16:57 2017)
  • FINISHED (Thu May 18 08:16:57 2017)

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Log file display

Show last lines of log file 
Terminal display
		
Message: UCSF Chimera completed in 35 min 4 sec 
OBJFILE /var/www/html/3vee/output/2017/may18/b67/2017.may18.b67.obj.gz 
Message: analyzing volume 
Message: normal CoM (-1.0, -1.9, -0.4) Å 
Message: reduced center failed 
Message: volume analysis completed in 0.55 sec 
Message: compressing 2017.may18.b67.mrc 
Message: waiting for system load (3.75) to calm down, total wait time: 3 hr 58 min 
Message: waiting for system load (4.06) to calm down, total wait time: 3 hr 58 min 
Message: waiting for system load (4.10) to calm down, total wait time: 3 hr 59 min 
Message: waiting for system load (4.13) to calm down, total wait time: 3 hr 59 min 
Message: waiting for system load (4.44) to calm down, total wait time: 3 hr 60 min 
Message: running now 
Message: waiting for system load (4.22) to calm down, total wait time: 4 hr min 
Message: waiting for system load (4.21) to calm down, total wait time: 4 hr 1 min 
Message: waiting for system load (4.31) to calm down, total wait time: 4 hr 2 min 
Message: waiting for system load (4.41) to calm down, total wait time: 4 hr 2 min 
Message: running now 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
Download source code
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If you find this useful or want more functionality please contact Neil <vossman77 [at] yahoo.com>
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