3v Running Log for JobId '2017.may19.08f'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=161.111.19.177 (Fri May 19 07:21:20 2017)
  • waiting for system load (7.03) to calm down, total wait time: 3 min 39 sec (Fri May 19 07:21:20 2017)
  • waiting for system load (6.37) to calm down, total wait time: 6 min 14 sec (Fri May 19 07:24:59 2017)
  • waiting for system load (7.18) to calm down, total wait time: 10 min 10 sec (Fri May 19 07:27:34 2017)
  • waiting for system load (5.95) to calm down, total wait time: 12 min 12 sec (Fri May 19 07:31:30 2017)
  • waiting for system load (7.16) to calm down, total wait time: 16 min 6 sec (Fri May 19 07:33:32 2017)
  • waiting for system load (6.31) to calm down, total wait time: 18 min 35 sec (Fri May 19 07:37:26 2017)
  • waiting for system load (7.42) to calm down, total wait time: 23 min 0 sec (Fri May 19 07:39:56 2017)
  • waiting for system load (5.65) to calm down, total wait time: 24 min 41 sec (Fri May 19 07:44:21 2017)
  • waiting for system load (6.88) to calm down, total wait time: 28 min 4 sec (Fri May 19 07:46:01 2017)
  • running now (Fri May 19 07:49:25 2017)
  • converting pdb into xyzr (Fri May 19 07:49:25 2017)
  • waiting for system load (6.20) to calm down, total wait time: 30 min 25 sec (Fri May 19 07:49:25 2017)
  • waiting for system load (6.78) to calm down, total wait time: 33 min 38 sec (Fri May 19 07:51:46 2017)
  • waiting for system load (6.23) to calm down, total wait time: 36 min 1 sec (Fri May 19 07:54:59 2017)
  • waiting for system load (6.57) to calm down, total wait time: 38 min 54 sec (Fri May 19 07:57:22 2017)
  • waiting for system load (7.42) to calm down, total wait time: 43 min 19 sec (Fri May 19 08:00:15 2017)
  • waiting for system load (7.31) to calm down, total wait time: 47 min 30 sec (Fri May 19 08:04:40 2017)
  • waiting for system load (5.99) to calm down, total wait time: 49 min 35 sec (Fri May 19 08:08:52 2017)
  • waiting for system load (7.35) to calm down, total wait time: 53 min 51 sec (Fri May 19 08:10:56 2017)
  • running now (Fri May 19 08:15:12 2017)
  • completed conversion of PDB file: 2017.may19.08f.pdb (size: 82k) (Fri May 19 08:15:15 2017)
  • converted 2620 atoms of 2620 atoms (Fri May 19 08:15:15 2017)
  • found 2620 atoms in pdb (Fri May 19 08:15:15 2017)
  • waiting for system load (5.73) to calm down, total wait time: 55 min 37 sec (Fri May 19 08:15:15 2017)
  • waiting for system load (7.08) to calm down, total wait time: 59 min 22 sec (Fri May 19 08:17:01 2017)
  • waiting for system load (5.99) to calm down, total wait time: 61 min 26 sec (Fri May 19 08:20:46 2017)
  • waiting for system load (6.93) to calm down, total wait time: 64 min 55 sec (Fri May 19 08:22:50 2017)
  • waiting for system load (5.81) to calm down, total wait time: 66 min 46 sec (Fri May 19 08:26:19 2017)
  • waiting for system load (5.28) to calm down, total wait time: 68 min 4 sec (Fri May 19 08:28:10 2017)
  • waiting for system load (7.12) to calm down, total wait time: 1 hr 12 min (Fri May 19 08:29:29 2017)
  • waiting for system load (5.79) to calm down, total wait time: 1 hr 14 min (Fri May 19 08:33:18 2017)
  • waiting for system load (6.92) to calm down, total wait time: 1 hr 17 min (Fri May 19 08:35:09 2017)
  • running now (Fri May 19 08:38:36 2017)
  • running 3v volume program (Fri May 19 08:38:36 2017)
  • waiting for system load (5.79) to calm down, total wait time: 1 hr 19 min (Fri May 19 08:38:36 2017)
  • waiting for system load (5.76) to calm down, total wait time: 1 hr 21 min (Fri May 19 08:40:26 2017)
  • waiting for system load (7.43) to calm down, total wait time: 1 hr 25 min (Fri May 19 08:42:14 2017)
  • waiting for system load (5.01) to calm down, total wait time: 1 hr 26 min (Fri May 19 08:46:40 2017)
  • waiting for system load (7.03) to calm down, total wait time: 1 hr 30 min (Fri May 19 08:47:45 2017)
  • waiting for system load (5.49) to calm down, total wait time: 1 hr 31 min (Fri May 19 08:51:25 2017)
  • waiting for system load (5.63) to calm down, total wait time: 1 hr 33 min (Fri May 19 08:52:55 2017)
  • waiting for system load (7.10) to calm down, total wait time: 1 hr 37 min (Fri May 19 08:54:35 2017)
  • running now (Fri May 19 08:58:22 2017)
  • waiting for system load (5.42) to calm down, total wait time: 1 hr 38 min (Fri May 19 08:58:25 2017)
  • waiting for system load (6.89) to calm down, total wait time: 1 hr 42 min (Fri May 19 08:59:51 2017)
  • waiting for system load (6.08) to calm down, total wait time: 1 hr 44 min (Fri May 19 09:03:16 2017)
  • waiting for system load (5.89) to calm down, total wait time: 1 hr 46 min (Fri May 19 09:05:27 2017)
  • waiting for system load (7.04) to calm down, total wait time: 1 hr 50 min (Fri May 19 09:07:24 2017)
  • waiting for system load (5.49) to calm down, total wait time: 1 hr 51 min (Fri May 19 09:11:05 2017)
  • waiting for system load (7.20) to calm down, total wait time: 1 hr 55 min (Fri May 19 09:12:36 2017)
  • running now (Fri May 19 09:16:34 2017)
  • smoothing out volume (Fri May 19 09:16:34 2017)
  • waiting for system load (5.39) to calm down, total wait time: 1 hr 56 min (Fri May 19 09:16:34 2017)
  • waiting for system load (6.01) to calm down, total wait time: 1 hr 59 min (Fri May 19 09:17:59 2017)
  • waiting for system load (6.49) to calm down, total wait time: 2 hr 1 min (Fri May 19 09:20:05 2017)
  • waiting for system load (5.53) to calm down, total wait time: 2 hr 3 min (Fri May 19 09:22:50 2017)
  • waiting for system load (6.54) to calm down, total wait time: 2 hr 6 min (Fri May 19 09:24:24 2017)
  • waiting for system load (6.28) to calm down, total wait time: 2 hr 8 min (Fri May 19 09:27:14 2017)
  • waiting for system load (5.08) to calm down, total wait time: 2 hr 9 min (Fri May 19 09:29:41 2017)
  • running now (Fri May 19 09:30:49 2017)
  • imaging volume (download mrc) with UCSF Chimera (Fri May 19 09:30:50 2017)
  • UCSF Chimera created Jmol compatible file (Fri May 19 09:31:06 2017)
  • compressing 2017.may19.08f.obj (Fri May 19 09:31:06 2017)
  • waiting for system load (6.34) to calm down, total wait time: 2 hr 12 min (Fri May 19 09:31:06 2017)
  • waiting for system load (6.28) to calm down, total wait time: 2 hr 14 min (Fri May 19 09:33:38 2017)
  • waiting for system load (5.58) to calm down, total wait time: 2 hr 16 min (Fri May 19 09:36:06 2017)
  • waiting for system load (6.48) to calm down, total wait time: 2 hr 19 min (Fri May 19 09:37:42 2017)
  • waiting for system load (5.88) to calm down, total wait time: 2 hr 21 min (Fri May 19 09:40:27 2017)
  • waiting for system load (5.36) to calm down, total wait time: 2 hr 22 min (Fri May 19 09:42:23 2017)
  • waiting for system load (6.16) to calm down, total wait time: 2 hr 24 min (Fri May 19 09:43:46 2017)
  • waiting for system load (6.59) to calm down, total wait time: 2 hr 27 min (Fri May 19 09:46:04 2017)
  • running now (Fri May 19 09:48:59 2017)
  • waiting for system load (5.48) to calm down, total wait time: 2 hr 29 min (Fri May 19 09:48:59 2017)
  • waiting for system load (6.20) to calm down, total wait time: 2 hr 31 min (Fri May 19 09:50:29 2017)
  • waiting for system load (6.08) to calm down, total wait time: 2 hr 33 min (Fri May 19 09:52:50 2017)
  • waiting for system load (5.67) to calm down, total wait time: 2 hr 35 min (Fri May 19 09:55:01 2017)
  • waiting for system load (4.74) to calm down, total wait time: 2 hr 36 min (Fri May 19 09:56:43 2017)
  • waiting for system load (6.06) to calm down, total wait time: 2 hr 38 min (Fri May 19 09:57:36 2017)
  • waiting for system load (6.08) to calm down, total wait time: 2 hr 40 min (Fri May 19 09:59:45 2017)
  • waiting for system load (5.54) to calm down, total wait time: 2 hr 42 min (Fri May 19 10:01:57 2017)
  • running now (Fri May 19 10:03:30 2017)
  • UCSF Chimera completed in 65 min 6 sec (Fri May 19 10:03:31 2017)
  • analyzing volume (Fri May 19 10:03:31 2017)
  • normal CoM (-6.0, -1.1, 1.3) Å (Fri May 19 10:03:31 2017)
  • reduced center failed (Fri May 19 10:03:31 2017)
  • volume analysis completed in 274.39 msec (Fri May 19 10:03:31 2017)
  • compressing 2017.may19.08f.mrc (Fri May 19 10:03:31 2017)
  • waiting for system load (4.76) to calm down, total wait time: 2 hr 43 min (Fri May 19 10:03:31 2017)
  • waiting for system load (5.56) to calm down, total wait time: 2 hr 44 min (Fri May 19 10:04:24 2017)
  • waiting for system load (6.58) to calm down, total wait time: 2 hr 47 min (Fri May 19 10:05:59 2017)
  • waiting for system load (5.56) to calm down, total wait time: 2 hr 49 min (Fri May 19 10:08:53 2017)
  • waiting for system load (5.00) to calm down, total wait time: 2 hr 50 min (Fri May 19 10:10:28 2017)
  • waiting for system load (6.20) to calm down, total wait time: 2 hr 52 min (Fri May 19 10:11:32 2017)
  • waiting for system load (5.82) to calm down, total wait time: 2 hr 54 min (Fri May 19 10:13:53 2017)
  • waiting for system load (5.59) to calm down, total wait time: 2 hr 56 min (Fri May 19 10:15:45 2017)
  • running now (Fri May 19 10:17:22 2017)
  • waiting for system load (5.01) to calm down, total wait time: 2 hr 57 min (Fri May 19 10:17:22 2017)
  • waiting for system load (6.28) to calm down, total wait time: 2 hr 59 min (Fri May 19 10:18:27 2017)
  • waiting for system load (5.82) to calm down, total wait time: 3 hr 1 min (Fri May 19 10:20:54 2017)
  • waiting for system load (5.76) to calm down, total wait time: 3 hr 3 min (Fri May 19 10:22:46 2017)
  • waiting for system load (5.35) to calm down, total wait time: 3 hr 4 min (Fri May 19 10:24:35 2017)
  • waiting for system load (6.55) to calm down, total wait time: 3 hr 7 min (Fri May 19 10:25:57 2017)
  • waiting for system load (5.76) to calm down, total wait time: 3 hr 9 min (Fri May 19 10:28:48 2017)
  • waiting for system load (5.73) to calm down, total wait time: 3 hr 11 min (Fri May 19 10:30:36 2017)
  • waiting for system load (6.03) to calm down, total wait time: 3 hr 13 min (Fri May 19 10:32:22 2017)
  • running now (Fri May 19 10:34:30 2017)
  • FINISHED (Fri May 19 10:34:30 2017)

hit reload to refresh this page



Log file display

Show last lines of log file 
Terminal display
		
Message: waiting for system load (4.76) to calm down, total wait time: 2 hr 43 min 
Message: waiting for system load (5.56) to calm down, total wait time: 2 hr 44 min 
Message: waiting for system load (6.58) to calm down, total wait time: 2 hr 47 min 
Message: waiting for system load (5.56) to calm down, total wait time: 2 hr 49 min 
Message: waiting for system load (5.00) to calm down, total wait time: 2 hr 50 min 
Message: waiting for system load (6.20) to calm down, total wait time: 2 hr 52 min 
Message: waiting for system load (5.82) to calm down, total wait time: 2 hr 54 min 
Message: waiting for system load (5.59) to calm down, total wait time: 2 hr 56 min 
Message: running now 
Message: waiting for system load (5.01) to calm down, total wait time: 2 hr 57 min 
Message: waiting for system load (6.28) to calm down, total wait time: 2 hr 59 min 
Message: waiting for system load (5.82) to calm down, total wait time: 3 hr 1 min 
Message: waiting for system load (5.76) to calm down, total wait time: 3 hr 3 min 
Message: waiting for system load (5.35) to calm down, total wait time: 3 hr 4 min 
Message: waiting for system load (6.55) to calm down, total wait time: 3 hr 7 min 
Message: waiting for system load (5.76) to calm down, total wait time: 3 hr 9 min 
Message: waiting for system load (5.73) to calm down, total wait time: 3 hr 11 min 
Message: waiting for system load (6.03) to calm down, total wait time: 3 hr 13 min 
Message: running now 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
Download source code
Help
Site news and updates
If you find this useful or want more functionality please contact Neil <vossman77 [at] yahoo.com>
back to main page