3v Results for JobId '2017.oct12.109'

Run Information

biological unit: no
use hetero atoms: no
allow public display: no
grid resolution: crude
probestep: 3.0
minprobe: 0.0
pymol: True
waterpdb: False
pdbfile: /var/www/html/3vee/output/uploads/2017.oct12.109.pdb
maxprobe: 9.0



Show running log


Images of your surface at probe size: 0.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 2.0 Å
Volume: 1197064 Å3
Surface area: 928341 Å2
Sphericity, Ψ: 0.06
Effective radius: 3.87 Å
Center of Mass: (17.0, 32.8, -2.6) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 2.0 Å
Volume: 2144288 Å3
Surface area: 302412 Å2
Sphericity, Ψ: 0.27
Effective radius: 21.27 Å
Center of Mass: (12.9, 28.5, 5.3) Å

Downloadable files of your surface:




Images of your surface at probe size: 6.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 2.0 Å
Volume: 2582760 Å3
Surface area: 217394 Å2
Sphericity, Ψ: 0.42
Effective radius: 35.64 Å
Center of Mass: (8.8, 28.0, 5.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 9.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 2.0 Å
Volume: 2702280 Å3
Surface area: 185653 Å2
Sphericity, Ψ: 0.51
Effective radius: 43.67 Å
Center of Mass: (12.9, 32.4, 5.6) Å

Downloadable files of your surface:



Downloadable files of your surface:

Show running log



Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
Download source code
Help
Site news and updates
If you find this useful or want more functionality please contact Neil <vossman77 [at] yahoo.com>
back to main page