3v Results for JobId '2018.apr16.15a'

Run Information

biological unit: no
use hetero atoms: no
allow public display: no
grid resolution: medium
smallprobe: 2.0
bigprobe: 6.0
pymol: False
waterpdb: False
pdbfile: /var/www/html/3vee/output/uploads/2018.apr16.15a.pdb
numchan: 13



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Images of channel 1:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 202 Å3
Surface area: 185 Å2
Sphericity, Ψ: 0.90
Effective radius: 3.27 Å
Center of Mass: (-56.3, -45.1, -48.8) Å

Downloadable files of your surface:




Images of channel 2:

           
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Volume Information

Voxel size: 0.8 Å
Volume: 162 Å3
Surface area: 187 Å2
Sphericity, Ψ: 0.77
Effective radius: 2.60 Å
Center of Mass: (-55.4, -44.9, -48.6) Å

Downloadable files of your surface:




Images of channel 3:

           
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Volume Information

Voxel size: 0.8 Å
Volume: 105 Å3
Surface area: 120 Å2
Sphericity, Ψ: 0.90
Effective radius: 2.63 Å
Center of Mass: (-56.8, -44.7, -51.0) Å

Downloadable files of your surface:




Images of channel 4:

           
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Volume Information

Voxel size: 0.8 Å
Volume: 334 Å3
Surface area: 256 Å2
Sphericity, Ψ: 0.91
Effective radius: 3.91 Å
Center of Mass: (-54.9, -45.5, -48.8) Å

Downloadable files of your surface:




Images of channel 5:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 133 Å3
Surface area: 151 Å2
Sphericity, Ψ: 0.83
Effective radius: 2.64 Å
Center of Mass: (-57.2, -44.0, -50.5) Å

Downloadable files of your surface:




Images of channel 6:

           
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Volume Information

Voxel size: 0.8 Å
Volume: 1140 Å3
Surface area: 766 Å2
Sphericity, Ψ: 0.69
Effective radius: 4.46 Å
Center of Mass: (-52.9, -35.2, -45.8) Å

Downloadable files of your surface:




Images of channel 7:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 424 Å3
Surface area: 346 Å2
Sphericity, Ψ: 0.79
Effective radius: 3.68 Å
Center of Mass: (-55.6, -43.4, -47.1) Å

Downloadable files of your surface:




Images of channel 8:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 598 Å3
Surface area: 522 Å2
Sphericity, Ψ: 0.66
Effective radius: 3.44 Å
Center of Mass: (-54.5, -41.5, -45.6) Å

Downloadable files of your surface:




Images of channel 9:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 742 Å3
Surface area: 497 Å2
Sphericity, Ψ: 0.80
Effective radius: 4.48 Å
Center of Mass: (-55.2, -41.4, -46.1) Å

Downloadable files of your surface:




Images of channel 10:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 327 Å3
Surface area: 275 Å2
Sphericity, Ψ: 0.83
Effective radius: 3.57 Å
Center of Mass: (-54.2, -45.5, -49.2) Å

Downloadable files of your surface:




Images of channel 11:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 423 Å3
Surface area: 332 Å2
Sphericity, Ψ: 0.82
Effective radius: 3.82 Å
Center of Mass: (-54.2, -43.6, -47.6) Å

Downloadable files of your surface:




Images of channel 12:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 1209 Å3
Surface area: 740 Å2
Sphericity, Ψ: 0.74
Effective radius: 4.90 Å
Center of Mass: (-51.4, -40.3, -48.7) Å

Downloadable files of your surface:




Images of channel 13:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 576 Å3
Surface area: 472 Å2
Sphericity, Ψ: 0.71
Effective radius: 3.66 Å
Center of Mass: (-56.4, -39.8, -46.2) Å

Downloadable files of your surface:



Downloadable files of your surface:

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Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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