3v Results for JobId '2018.apr16.99b'

Run Information

biological unit: no
use hetero atoms: no
allow public display: no
grid resolution: medium
smallprobe: 2.0
bigprobe: 6.0
pymol: False
waterpdb: False
pdbfile: /var/www/html/3vee/output/uploads/2018.apr16.99b.pdb
numchan: 13



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Images of channel 1:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 180 Å3
Surface area: 179 Å2
Sphericity, Ψ: 0.86
Effective radius: 3.01 Å
Center of Mass: (-56.0, -45.4, -47.2) Å

Downloadable files of your surface:




Images of channel 2:

           
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Volume Information

Voxel size: 0.8 Å
Volume: 273 Å3
Surface area: 261 Å2
Sphericity, Ψ: 0.78
Effective radius: 3.13 Å
Center of Mass: (-52.8, -43.2, -49.5) Å

Downloadable files of your surface:




Images of channel 3:

           
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Volume Information

Voxel size: 0.8 Å
Volume: 217 Å3
Surface area: 239 Å2
Sphericity, Ψ: 0.73
Effective radius: 2.73 Å
Center of Mass: (-55.6, -43.1, -47.3) Å

Downloadable files of your surface:




Images of channel 4:

           
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Volume Information

Voxel size: 0.8 Å
Volume: 421 Å3
Surface area: 343 Å2
Sphericity, Ψ: 0.79
Effective radius: 3.68 Å
Center of Mass: (-54.7, -40.2, -46.4) Å

Downloadable files of your surface:




Images of channel 5:

           
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Volume Information

Voxel size: 0.8 Å
Volume: 313 Å3
Surface area: 243 Å2
Sphericity, Ψ: 0.92
Effective radius: 3.87 Å
Center of Mass: (-55.0, -45.6, -47.4) Å

Downloadable files of your surface:




Images of channel 6:

           
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Volume Information

Voxel size: 0.8 Å
Volume: 1015 Å3
Surface area: 737 Å2
Sphericity, Ψ: 0.66
Effective radius: 4.13 Å
Center of Mass: (-52.9, -35.2, -44.0) Å

Downloadable files of your surface:




Images of channel 7:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 187 Å3
Surface area: 168 Å2
Sphericity, Ψ: 0.94
Effective radius: 3.34 Å
Center of Mass: (-57.6, -44.0, -47.7) Å

Downloadable files of your surface:




Images of channel 8:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 922 Å3
Surface area: 604 Å2
Sphericity, Ψ: 0.76
Effective radius: 4.58 Å
Center of Mass: (-52.6, -40.7, -44.0) Å

Downloadable files of your surface:




Images of channel 9:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 313 Å3
Surface area: 290 Å2
Sphericity, Ψ: 0.77
Effective radius: 3.24 Å
Center of Mass: (-52.8, -45.2, -47.7) Å

Downloadable files of your surface:




Images of channel 10:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 494 Å3
Surface area: 430 Å2
Sphericity, Ψ: 0.70
Effective radius: 3.44 Å
Center of Mass: (-56.8, -40.9, -44.1) Å

Downloadable files of your surface:




Images of channel 11:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 1200 Å3
Surface area: 747 Å2
Sphericity, Ψ: 0.73
Effective radius: 4.82 Å
Center of Mass: (-51.2, -40.5, -47.0) Å

Downloadable files of your surface:




Images of channel 12:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 732 Å3
Surface area: 563 Å2
Sphericity, Ψ: 0.70
Effective radius: 3.90 Å
Center of Mass: (-56.4, -40.5, -43.4) Å

Downloadable files of your surface:




Images of channel 13:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 308 Å3
Surface area: 242 Å2
Sphericity, Ψ: 0.91
Effective radius: 3.81 Å
Center of Mass: (-57.4, -44.7, -46.1) Å

Downloadable files of your surface:



Downloadable files of your surface:

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Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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