3v Results for JobId '2018.apr16.ad3'

Run Information

biological unit: no
use hetero atoms: no
allow public display: no
grid resolution: medium
smallprobe: 2.0
bigprobe: 6.0
pymol: False
waterpdb: False
pdbfile: /var/www/html/3vee/output/uploads/2018.apr16.ad3.pdb
numchan: 12



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Images of channel 1:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 158 Å3
Surface area: 153 Å2
Sphericity, Ψ: 0.92
Effective radius: 3.11 Å
Center of Mass: (-57.3, -45.0, -49.7) Å

Downloadable files of your surface:




Images of channel 2:

           
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Volume Information

Voxel size: 0.8 Å
Volume: 199 Å3
Surface area: 192 Å2
Sphericity, Ψ: 0.86
Effective radius: 3.11 Å
Center of Mass: (-58.1, -43.7, -48.8) Å

Downloadable files of your surface:




Images of channel 3:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 310 Å3
Surface area: 296 Å2
Sphericity, Ψ: 0.75
Effective radius: 3.15 Å
Center of Mass: (-54.3, -44.0, -48.7) Å

Downloadable files of your surface:




Images of channel 4:

           
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Volume Information

Voxel size: 0.8 Å
Volume: 168 Å3
Surface area: 159 Å2
Sphericity, Ψ: 0.93
Effective radius: 3.17 Å
Center of Mass: (-56.6, -45.4, -50.2) Å

Downloadable files of your surface:




Images of channel 5:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 376 Å3
Surface area: 294 Å2
Sphericity, Ψ: 0.86
Effective radius: 3.83 Å
Center of Mass: (-56.6, -44.2, -46.9) Å

Downloadable files of your surface:




Images of channel 6:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 735 Å3
Surface area: 498 Å2
Sphericity, Ψ: 0.79
Effective radius: 4.42 Å
Center of Mass: (-53.6, -38.8, -47.1) Å

Downloadable files of your surface:




Images of channel 7:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 265 Å3
Surface area: 227 Å2
Sphericity, Ψ: 0.88
Effective radius: 3.51 Å
Center of Mass: (-56.6, -43.8, -49.0) Å

Downloadable files of your surface:




Images of channel 8:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 707 Å3
Surface area: 528 Å2
Sphericity, Ψ: 0.73
Effective radius: 4.01 Å
Center of Mass: (-54.8, -40.9, -48.2) Å

Downloadable files of your surface:




Images of channel 9:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 990 Å3
Surface area: 633 Å2
Sphericity, Ψ: 0.76
Effective radius: 4.69 Å
Center of Mass: (-55.7, -41.3, -47.1) Å

Downloadable files of your surface:




Images of channel 10:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 263 Å3
Surface area: 236 Å2
Sphericity, Ψ: 0.84
Effective radius: 3.34 Å
Center of Mass: (-57.1, -44.7, -48.7) Å

Downloadable files of your surface:




Images of channel 11:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 1421 Å3
Surface area: 773 Å2
Sphericity, Ψ: 0.79
Effective radius: 5.51 Å
Center of Mass: (-50.2, -40.2, -47.4) Å

Downloadable files of your surface:




Images of channel 12:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 663 Å3
Surface area: 456 Å2
Sphericity, Ψ: 0.81
Effective radius: 4.36 Å
Center of Mass: (-55.8, -40.8, -47.9) Å

Downloadable files of your surface:



Downloadable files of your surface:

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Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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