3v Results for JobId '2018.apr16.ca1'

Run Information

biological unit: no
use hetero atoms: no
allow public display: no
grid resolution: medium
smallprobe: 2.0
bigprobe: 5.0
pymol: False
waterpdb: False
pdbfile: /var/www/html/3vee/output/uploads/2018.apr16.ca1.pdb
numchan: 10



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Images of channel 1:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 1433 Å3
Surface area: 884 Å2
Sphericity, Ψ: 0.70
Effective radius: 4.86 Å
Center of Mass: (-36.1, -56.8, -32.3) Å

Downloadable files of your surface:




Images of channel 2:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 107 Å3
Surface area: 130 Å2
Sphericity, Ψ: 0.84
Effective radius: 2.46 Å
Center of Mass: (-43.2, -61.4, -36.7) Å

Downloadable files of your surface:




Images of channel 3:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 716 Å3
Surface area: 513 Å2
Sphericity, Ψ: 0.75
Effective radius: 4.19 Å
Center of Mass: (-39.1, -54.9, -36.0) Å

Downloadable files of your surface:




Images of channel 4:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 846 Å3
Surface area: 540 Å2
Sphericity, Ψ: 0.80
Effective radius: 4.70 Å
Center of Mass: (-40.1, -59.0, -32.5) Å

Downloadable files of your surface:




Images of channel 5:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 1273 Å3
Surface area: 796 Å2
Sphericity, Ψ: 0.71
Effective radius: 4.79 Å
Center of Mass: (-37.6, -53.2, -32.5) Å

Downloadable files of your surface:




Images of channel 6:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 145 Å3
Surface area: 161 Å2
Sphericity, Ψ: 0.83
Effective radius: 2.70 Å
Center of Mass: (-43.7, -59.6, -36.2) Å

Downloadable files of your surface:




Images of channel 7:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 118 Å3
Surface area: 132 Å2
Sphericity, Ψ: 0.89
Effective radius: 2.70 Å
Center of Mass: (-43.6, -61.0, -36.0) Å

Downloadable files of your surface:




Images of channel 8:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 380 Å3
Surface area: 292 Å2
Sphericity, Ψ: 0.87
Effective radius: 3.91 Å
Center of Mass: (-42.4, -60.1, -33.4) Å

Downloadable files of your surface:




Images of channel 9:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 293 Å3
Surface area: 291 Å2
Sphericity, Ψ: 0.73
Effective radius: 3.01 Å
Center of Mass: (-43.8, -58.2, -32.6) Å

Downloadable files of your surface:




Images of channel 10:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 256 Å3
Surface area: 226 Å2
Sphericity, Ψ: 0.86
Effective radius: 3.40 Å
Center of Mass: (-43.0, -59.8, -35.9) Å

Downloadable files of your surface:



Downloadable files of your surface:

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Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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