3v Results for JobId '2018.apr16.ccd'

Run Information

biological unit: no
use hetero atoms: no
allow public display: no
grid resolution: medium
smallprobe: 2.0
bigprobe: 6.0
pymol: False
waterpdb: False
pdbfile: /var/www/html/3vee/output/uploads/2018.apr16.ccd.pdb
numchan: 13



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Images of channel 1:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 177 Å3
Surface area: 180 Å2
Sphericity, Ψ: 0.85
Effective radius: 2.95 Å
Center of Mass: (-56.0, -45.5, -47.2) Å

Downloadable files of your surface:




Images of channel 2:

           
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Volume Information

Voxel size: 0.8 Å
Volume: 77 Å3
Surface area: 95 Å2
Sphericity, Ψ: 0.92
Effective radius: 2.43 Å
Center of Mass: (-57.0, -46.7, -48.9) Å

Downloadable files of your surface:




Images of channel 3:

           
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Volume Information

Voxel size: 0.8 Å
Volume: 243 Å3
Surface area: 270 Å2
Sphericity, Ψ: 0.70
Effective radius: 2.70 Å
Center of Mass: (-54.3, -43.0, -47.7) Å

Downloadable files of your surface:




Images of channel 4:

           
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Volume Information

Voxel size: 0.8 Å
Volume: 105 Å3
Surface area: 120 Å2
Sphericity, Ψ: 0.90
Effective radius: 2.63 Å
Center of Mass: (-56.8, -44.7, -49.5) Å

Downloadable files of your surface:




Images of channel 5:

           
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Volume Information

Voxel size: 0.8 Å
Volume: 364 Å3
Surface area: 298 Å2
Sphericity, Ψ: 0.83
Effective radius: 3.66 Å
Center of Mass: (-54.7, -43.1, -45.9) Å

Downloadable files of your surface:




Images of channel 6:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 316 Å3
Surface area: 245 Å2
Sphericity, Ψ: 0.92
Effective radius: 3.88 Å
Center of Mass: (-55.1, -45.6, -47.5) Å

Downloadable files of your surface:




Images of channel 7:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 670 Å3
Surface area: 514 Å2
Sphericity, Ψ: 0.72
Effective radius: 3.91 Å
Center of Mass: (-55.8, -38.6, -43.9) Å

Downloadable files of your surface:




Images of channel 8:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 654 Å3
Surface area: 555 Å2
Sphericity, Ψ: 0.66
Effective radius: 3.54 Å
Center of Mass: (-54.9, -40.2, -44.6) Å

Downloadable files of your surface:




Images of channel 9:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 803 Å3
Surface area: 528 Å2
Sphericity, Ψ: 0.79
Effective radius: 4.56 Å
Center of Mass: (-54.2, -43.6, -43.7) Å

Downloadable files of your surface:




Images of channel 10:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 440 Å3
Surface area: 337 Å2
Sphericity, Ψ: 0.83
Effective radius: 3.92 Å
Center of Mass: (-52.7, -45.2, -47.6) Å

Downloadable files of your surface:




Images of channel 11:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 429 Å3
Surface area: 343 Å2
Sphericity, Ψ: 0.80
Effective radius: 3.75 Å
Center of Mass: (-53.7, -43.4, -46.2) Å

Downloadable files of your surface:




Images of channel 12:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 1305 Å3
Surface area: 769 Å2
Sphericity, Ψ: 0.75
Effective radius: 5.09 Å
Center of Mass: (-51.3, -39.1, -45.5) Å

Downloadable files of your surface:




Images of channel 13:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.8 Å
Volume: 635 Å3
Surface area: 537 Å2
Sphericity, Ψ: 0.66
Effective radius: 3.55 Å
Center of Mass: (-55.5, -40.1, -44.1) Å

Downloadable files of your surface:



Downloadable files of your surface:

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Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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