3v Results for JobId '2018.feb08.2bf'

Run Information

biological unit: no
use hetero atoms: no
allow public display: no
grid resolution: low
smallprobe: 1.4
bigprobe: 10.0
pymol: False
waterpdb: False
pdbfile: /var/www/html/3vee/output/uploads/2018.feb08.2bf.pdb
numchan: 20



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Images of channel 1:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 36175 Å3
Surface area: 29560 Å2
Sphericity, Ψ: 0.18
Effective radius: 3.67 Å
Center of Mass: (-59.9, -35.2, 15.8) Å

Downloadable files of your surface:




Images of channel 2:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 55 Å3
Surface area: 82 Å2
Sphericity, Ψ: 0.85
Effective radius: 2.01 Å
Center of Mass: (-92.9, -90.5, -47.1) Å
Reduced Center: (0.0, 0.0, 0.0) Å

Downloadable files of your surface:




Images of channel 3:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 121 Å3
Surface area: 210 Å2
Sphericity, Ψ: 0.56
Effective radius: 1.72 Å
Center of Mass: (-88.9, -90.6, -46.0) Å
Reduced Center: (0.0, 0.0, 0.0) Å

Downloadable files of your surface:




Images of channel 4:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 75 Å3
Surface area: 124 Å2
Sphericity, Ψ: 0.69
Effective radius: 1.80 Å
Center of Mass: (-90.1, -90.2, -46.3) Å
Reduced Center: (0.0, 0.0, 0.0) Å

Downloadable files of your surface:




Images of channel 5:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 225 Å3
Surface area: 314 Å2
Sphericity, Ψ: 0.57
Effective radius: 2.15 Å
Center of Mass: (-89.7, -85.7, -44.8) Å

Downloadable files of your surface:




Images of channel 6:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 210 Å3
Surface area: 278 Å2
Sphericity, Ψ: 0.61
Effective radius: 2.27 Å
Center of Mass: (-89.7, -89.7, -41.6) Å

Downloadable files of your surface:




Images of channel 7:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 214 Å3
Surface area: 278 Å2
Sphericity, Ψ: 0.62
Effective radius: 2.31 Å
Center of Mass: (-89.9, -86.8, -44.6) Å

Downloadable files of your surface:




Images of channel 8:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 63 Å3
Surface area: 96 Å2
Sphericity, Ψ: 0.80
Effective radius: 1.97 Å
Center of Mass: (-91.7, -90.5, -46.4) Å
Reduced Center: (0.0, 0.0, 0.0) Å

Downloadable files of your surface:




Images of channel 9:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 53 Å3
Surface area: 91 Å2
Sphericity, Ψ: 0.75
Effective radius: 1.74 Å
Center of Mass: (-91.6, -89.7, -47.3) Å
Reduced Center: (0.0, 0.0, 0.0) Å

Downloadable files of your surface:




Images of channel 10:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 65 Å3
Surface area: 112 Å2
Sphericity, Ψ: 0.70
Effective radius: 1.74 Å
Center of Mass: (-91.8, -90.7, -46.3) Å
Reduced Center: (0.0, 0.0, 0.0) Å

Downloadable files of your surface:




Images of channel 11:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 207 Å3
Surface area: 326 Å2
Sphericity, Ψ: 0.52
Effective radius: 1.90 Å
Center of Mass: (-88.9, -87.9, -42.4) Å
Reduced Center: (0.0, 0.0, 0.0) Å

Downloadable files of your surface:




Images of channel 12:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 114 Å3
Surface area: 144 Å2
Sphericity, Ψ: 0.79
Effective radius: 2.36 Å
Center of Mass: (-92.2, -89.9, -45.5) Å

Downloadable files of your surface:




Images of channel 13:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 272 Å3
Surface area: 341 Å2
Sphericity, Ψ: 0.59
Effective radius: 2.39 Å
Center of Mass: (-87.2, -87.2, -44.8) Å

Downloadable files of your surface:




Images of channel 14:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 263 Å3
Surface area: 346 Å2
Sphericity, Ψ: 0.57
Effective radius: 2.28 Å
Center of Mass: (-87.2, -88.1, -45.3) Å

Downloadable files of your surface:




Images of channel 15:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 101 Å3
Surface area: 139 Å2
Sphericity, Ψ: 0.75
Effective radius: 2.18 Å
Center of Mass: (-91.8, -88.6, -45.7) Å
Reduced Center: (0.0, 0.0, 0.0) Å

Downloadable files of your surface:




Images of channel 16:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 277 Å3
Surface area: 352 Å2
Sphericity, Ψ: 0.58
Effective radius: 2.36 Å
Center of Mass: (-87.3, -87.1, -44.5) Å

Downloadable files of your surface:




Images of channel 17:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 114 Å3
Surface area: 154 Å2
Sphericity, Ψ: 0.74
Effective radius: 2.22 Å
Center of Mass: (-91.6, -89.0, -46.2) Å
Reduced Center: (0.0, 0.0, 0.0) Å

Downloadable files of your surface:




Images of channel 18:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 111 Å3
Surface area: 153 Å2
Sphericity, Ψ: 0.73
Effective radius: 2.17 Å
Center of Mass: (-91.5, -90.7, -44.1) Å
Reduced Center: (0.0, 0.0, 0.0) Å

Downloadable files of your surface:




Images of channel 19:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 280 Å3
Surface area: 339 Å2
Sphericity, Ψ: 0.61
Effective radius: 2.47 Å
Center of Mass: (-89.4, -87.8, -42.6) Å

Downloadable files of your surface:




Images of channel 20:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 57 Å3
Surface area: 96 Å2
Sphericity, Ψ: 0.74
Effective radius: 1.77 Å
Center of Mass: (-92.1, -90.5, -46.3) Å
Reduced Center: (0.0, 0.0, 0.0) Å

Downloadable files of your surface:




Images of channel 21:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 73 Å3
Surface area: 107 Å2
Sphericity, Ψ: 0.78
Effective radius: 2.03 Å
Center of Mass: (-92.2, -89.0, -46.0) Å
Reduced Center: (0.0, 0.0, 0.0) Å

Downloadable files of your surface:




Images of channel 22:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 69 Å3
Surface area: 96 Å2
Sphericity, Ψ: 0.84
Effective radius: 2.14 Å
Center of Mass: (-92.1, -89.9, -46.5) Å

Downloadable files of your surface:




Images of channel 23:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 63 Å3
Surface area: 98 Å2
Sphericity, Ψ: 0.78
Effective radius: 1.93 Å
Center of Mass: (-91.9, -91.2, -46.0) Å
Reduced Center: (0.0, 0.0, 0.0) Å

Downloadable files of your surface:



Downloadable files of your surface:

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Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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