3v Running Log for JobId '2018.jan07.391'

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  • host ip address=37.170.63.99 (Sun Jan 7 10:26:44 2018)
  • converting pdb into xyzr (Sun Jan 7 10:26:44 2018)
  • completed conversion of PDB file: 2018.jan07.391.pdb (size: 119k) (Sun Jan 7 10:26:45 2018)
  • converted 3793 atoms of 3793 atoms (Sun Jan 7 10:26:45 2018)
  • found 3793 atoms in pdb (Sun Jan 7 10:26:45 2018)
  • running 3v all channel program (Sun Jan 7 10:26:45 2018)
  • created 2 channel files (Sun Jan 7 10:26:46 2018)
  • Download MRC files: 1 2 (Sun Jan 7 10:26:46 2018)
  • imaging volume (download mrc) with UCSF Chimera (Sun Jan 7 10:26:46 2018)
  • UCSF Chimera created Jmol compatible file (Sun Jan 7 10:26:49 2018)
  • compressing channel-001.obj (Sun Jan 7 10:26:49 2018)
  • UCSF Chimera completed in 3.34 sec (Sun Jan 7 10:26:50 2018)
  • analyzing volume (Sun Jan 7 10:26:50 2018)
  • normal CoM (-36.0, -42.1, -36.5) Å (Sun Jan 7 10:26:50 2018)
  • reduced center failed (Sun Jan 7 10:26:50 2018)
  • volume analysis completed in 14.43 msec (Sun Jan 7 10:26:50 2018)
  • compressing channel-001.mrc (Sun Jan 7 10:26:50 2018)
  • imaging volume (download mrc) with UCSF Chimera (Sun Jan 7 10:26:50 2018)
  • UCSF Chimera created Jmol compatible file (Sun Jan 7 10:26:53 2018)
  • compressing channel-002.obj (Sun Jan 7 10:26:53 2018)
  • UCSF Chimera completed in 3.41 sec (Sun Jan 7 10:26:53 2018)
  • analyzing volume (Sun Jan 7 10:26:53 2018)
  • normal CoM (-36.1, -43.2, -35.9) Å (Sun Jan 7 10:26:53 2018)
  • reduced center failed (Sun Jan 7 10:26:53 2018)
  • volume analysis completed in 14.11 msec (Sun Jan 7 10:26:53 2018)
  • compressing channel-002.mrc (Sun Jan 7 10:26:53 2018)
  • tarring file list (Sun Jan 7 10:26:53 2018)
  • compressing channel-001.mrc (Sun Jan 7 10:26:53 2018)
  • compressing channel-002.mrc (Sun Jan 7 10:26:53 2018)
  • FINISHED (Sun Jan 7 10:26:53 2018)

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Log file display

Show last lines of log file 
Terminal display
		
Message: reduced center failed 
Message: volume analysis completed in 14.43 msec 
Message: compressing channel-001.mrc 
Message: imaging volume (d ... 
himera/'>UCSF Chimera 
/var/www/html/py/appionlib/apChimSnapshot.py 
Message: UCSF Chimera created Jmol compatible file 
Message: compressing channel-002.obj 
Message: UCSF Chimera completed in 3.41 sec 
OBJFILE /var/www/html/3vee/output/2018/jan07/391/channel-002.obj.gz 
Message: analyzing volume 
Message: normal CoM (-36.1, -43.2, -35.9) Å 
Message: reduced center failed 
Message: volume analysis completed in 14.11 msec 
Message: compressing channel-002.mrc 
Message: tarring file list 
Message: compressing channel-001.mrc 
Message: compressing channel-002.mrc 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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