3v Running Log for JobId '2018.jan07.4fc'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=47.11.209.120 (Mon Jan 8 02:13:27 2018)
  • converting pdb into xyzr (Mon Jan 8 02:13:28 2018)
  • completed conversion of PDB file: 2018.jan07.4fc.pdb (size: 24k) (Mon Jan 8 02:13:28 2018)
  • converted 760 atoms of 760 atoms (Mon Jan 8 02:13:28 2018)
  • found 760 atoms in pdb (Mon Jan 8 02:13:28 2018)
  • running 3v volume program (Mon Jan 8 02:13:28 2018)
  • smoothing out volume (Mon Jan 8 02:13:28 2018)
  • imaging volume (download mrc) with UCSF Chimera (Mon Jan 8 02:13:28 2018)
  • UCSF Chimera created Jmol compatible file (Mon Jan 8 02:13:35 2018)
  • compressing 2018.jan07.4fc.obj (Mon Jan 8 02:13:35 2018)
  • UCSF Chimera completed in 7.46 sec (Mon Jan 8 02:13:35 2018)
  • analyzing volume (Mon Jan 8 02:13:35 2018)
  • normal CoM (8.1, -2.0, -11.3) Å (Mon Jan 8 02:13:36 2018)
  • reduced center failed (Mon Jan 8 02:13:36 2018)
  • volume analysis completed in 380.78 msec (Mon Jan 8 02:13:36 2018)
  • compressing 2018.jan07.4fc.mrc (Mon Jan 8 02:13:36 2018)
  • FINISHED (Mon Jan 8 02:13:36 2018)

hit reload to refresh this page



Log file display

Show last lines of log file 
Terminal display
		
/var/www/html/output/2018/jan07/4fc 
Message: completed conversion of PDB file: 2018.jan07.4fc.pdb (size: 24k) 
Message: converted 760 atoms of 760 atoms 
Message: found 760 atoms in pdb 
Message: running 3v volume program 
wrote to mrc file: /var/www/html/3vee/output/2018/jan07/4fc/2018.jan07.4fc.mrc 
Message: smoothing out volume 
Message: imaging volume UCSF Chimera 
/var/www/html/py/appionlib/apChimSnapshot.py 
Message: UCSF Chimera created Jmol compatible file 
Message: compressing 2018.jan07.4fc.obj 
Message: UCSF Chimera completed in 7.46 sec 
OBJFILE /var/www/html/3vee/output/2018/jan07/4fc/2018.jan07.4fc.obj.gz 
Message: analyzing volume 
Message: normal CoM (8.1, -2.0, -11.3) Å 
Message: reduced center failed 
Message: volume analysis completed in 380.78 msec 
Message: compressing 2018.jan07.4fc.mrc 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
Download source code
Help
Site news and updates
If you find this useful or want more functionality please contact Neil <vossman77 [at] yahoo.com>
back to main page