3v Running Log for JobId '2018.may16.792'

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  • host ip address=172.85.57.129 (Wed May 16 11:10:47 2018)
  • converting pdb into xyzr (Wed May 16 11:10:47 2018)
  • completed conversion of PDB file: 2018.may16.792.pdb (size: 718k) (Wed May 16 11:10:55 2018)
  • converted 22972 atoms of 22972 atoms (Wed May 16 11:10:55 2018)
  • found 22972 atoms in pdb (Wed May 16 11:10:55 2018)
  • running 3v all channel program (Wed May 16 11:10:55 2018)
  • created 2 channel files (Wed May 16 11:11:02 2018)
  • Download MRC files: 1 2 (Wed May 16 11:11:02 2018)
  • imaging volume (download mrc) with UCSF Chimera (Wed May 16 11:11:02 2018)
  • UCSF Chimera created Jmol compatible file (Wed May 16 11:11:09 2018)
  • compressing channel-001.obj (Wed May 16 11:11:09 2018)
  • UCSF Chimera completed in 7.23 sec (Wed May 16 11:11:09 2018)
  • analyzing volume (Wed May 16 11:11:09 2018)
  • normal CoM (-72.5, -68.5, -91.0) Å (Wed May 16 11:11:09 2018)
  • reduced center failed (Wed May 16 11:11:09 2018)
  • volume analysis completed in 20.2 msec (Wed May 16 11:11:09 2018)
  • compressing channel-001.mrc (Wed May 16 11:11:09 2018)
  • imaging volume (download mrc) with UCSF Chimera (Wed May 16 11:11:09 2018)
  • UCSF Chimera created Jmol compatible file (Wed May 16 11:11:17 2018)
  • compressing channel-002.obj (Wed May 16 11:11:17 2018)
  • UCSF Chimera completed in 8.41 sec (Wed May 16 11:11:17 2018)
  • analyzing volume (Wed May 16 11:11:17 2018)
  • normal CoM (-64.2, -53.7, -77.0) Å (Wed May 16 11:11:18 2018)
  • reduced center failed (Wed May 16 11:11:18 2018)
  • volume analysis completed in 348.74 msec (Wed May 16 11:11:18 2018)
  • compressing channel-002.mrc (Wed May 16 11:11:18 2018)
  • tarring file list (Wed May 16 11:11:18 2018)
  • compressing channel-001.mrc (Wed May 16 11:11:18 2018)
  • compressing channel-002.mrc (Wed May 16 11:11:18 2018)
  • FINISHED (Wed May 16 11:11:18 2018)

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Log file display

Show last lines of log file 
Terminal display
		
Message: reduced center failed 
Message: volume analysis completed in 20.2 msec 
Message: compressing channel-001.mrc 
Message: imaging volume (d ... 
himera/'>UCSF Chimera 
/var/www/html/py/appionlib/apChimSnapshot.py 
Message: UCSF Chimera created Jmol compatible file 
Message: compressing channel-002.obj 
Message: UCSF Chimera completed in 8.41 sec 
OBJFILE /var/www/html/3vee/output/2018/may16/792/channel-002.obj.gz 
Message: analyzing volume 
Message: normal CoM (-64.2, -53.7, -77.0) Å 
Message: reduced center failed 
Message: volume analysis completed in 348.74 msec 
Message: compressing channel-002.mrc 
Message: tarring file list 
Message: compressing channel-001.mrc 
Message: compressing channel-002.mrc 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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