3v Running Log for JobId '2018.nov08.edd'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=134.245.29.198 (Thu Nov 8 05:22:36 2018)
  • converting pdb into xyzr (Thu Nov 8 05:22:36 2018)
  • completed conversion of PDB file: 2018.nov08.edd.pdb (size: 74k) (Thu Nov 8 05:22:38 2018)
  • converted 2354 atoms of 2354 atoms (Thu Nov 8 05:22:38 2018)
  • found 2354 atoms in pdb (Thu Nov 8 05:22:38 2018)
  • running 3v all channel program (Thu Nov 8 05:22:38 2018)
  • created 2 channel files (Thu Nov 8 05:22:40 2018)
  • Download MRC files: 1 2 (Thu Nov 8 05:22:40 2018)
  • imaging volume (download mrc) with UCSF Chimera (Thu Nov 8 05:22:40 2018)
  • UCSF Chimera created Jmol compatible file (Thu Nov 8 05:22:45 2018)
  • compressing channel-001.obj (Thu Nov 8 05:22:45 2018)
  • UCSF Chimera completed in 5.25 sec (Thu Nov 8 05:22:45 2018)
  • analyzing volume (Thu Nov 8 05:22:45 2018)
  • normal CoM (-33.9, -30.7, -36.7) Å (Thu Nov 8 05:22:45 2018)
  • reduced center failed (Thu Nov 8 05:22:45 2018)
  • volume analysis completed in 66.38 msec (Thu Nov 8 05:22:45 2018)
  • compressing channel-001.mrc (Thu Nov 8 05:22:45 2018)
  • imaging volume (download mrc) with UCSF Chimera (Thu Nov 8 05:22:45 2018)
  • UCSF Chimera created Jmol compatible file (Thu Nov 8 05:22:51 2018)
  • compressing channel-002.obj (Thu Nov 8 05:22:51 2018)
  • UCSF Chimera completed in 6.15 sec (Thu Nov 8 05:22:51 2018)
  • analyzing volume (Thu Nov 8 05:22:51 2018)
  • normal CoM (-31.5, -41.9, -39.7) Å (Thu Nov 8 05:22:51 2018)
  • reduced center failed (Thu Nov 8 05:22:51 2018)
  • volume analysis completed in 31.11 msec (Thu Nov 8 05:22:51 2018)
  • compressing channel-002.mrc (Thu Nov 8 05:22:51 2018)
  • tarring file list (Thu Nov 8 05:22:51 2018)
  • compressing channel-001.mrc (Thu Nov 8 05:22:51 2018)
  • compressing channel-002.mrc (Thu Nov 8 05:22:51 2018)
  • FINISHED (Thu Nov 8 05:22:51 2018)

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Log file display

Show last lines of log file 
Terminal display
		
Message: reduced center failed 
Message: volume analysis completed in 66.38 msec 
Message: compressing channel-001.mrc 
Message: imaging volume (d ... 
himera/'>UCSF Chimera 
/var/www/html/py/appionlib/apChimSnapshot.py 
Message: UCSF Chimera created Jmol compatible file 
Message: compressing channel-002.obj 
Message: UCSF Chimera completed in 6.15 sec 
OBJFILE /var/www/html/3vee/output/2018/nov08/edd/channel-002.obj.gz 
Message: analyzing volume 
Message: normal CoM (-31.5, -41.9, -39.7) Å 
Message: reduced center failed 
Message: volume analysis completed in 31.11 msec 
Message: compressing channel-002.mrc 
Message: tarring file list 
Message: compressing channel-001.mrc 
Message: compressing channel-002.mrc 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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