3v Running Log for JobId '2019.apr14.52f'

Program is still running, progress is shown below

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  • host ip address=69.124.71.174 (Sun Apr 14 12:53:08 2019)
  • converting pdb into xyzr (Sun Apr 14 12:53:08 2019)
  • completed conversion of PDB file: 2019.apr14.52f.pdb (size: 156k) (Sun Apr 14 12:53:12 2019)
  • converted 4989 atoms of 4989 atoms (Sun Apr 14 12:53:12 2019)
  • found 4989 atoms in pdb (Sun Apr 14 12:53:12 2019)
  • running 3v all channel program (Sun Apr 14 12:53:12 2019)
  • created 2 channel files (Sun Apr 14 12:53:14 2019)
  • Download MRC files: 1 2 (Sun Apr 14 12:53:14 2019)
  • imaging volume (download mrc) with UCSF Chimera (Sun Apr 14 12:53:14 2019)
  • UCSF Chimera created Jmol compatible file (Sun Apr 14 12:53:18 2019)
  • compressing channel-001.obj (Sun Apr 14 12:53:18 2019)
  • UCSF Chimera completed in 3.67 sec (Sun Apr 14 12:53:18 2019)
  • analyzing volume (Sun Apr 14 12:53:18 2019)
  • normal CoM (-34.7, -39.8, -41.3) Å (Sun Apr 14 12:53:18 2019)
  • reduced center failed (Sun Apr 14 12:53:18 2019)
  • volume analysis completed in 104.26 msec (Sun Apr 14 12:53:18 2019)
  • compressing channel-001.mrc (Sun Apr 14 12:53:18 2019)
  • imaging volume (download mrc) with UCSF Chimera (Sun Apr 14 12:53:18 2019)
  • UCSF Chimera created Jmol compatible file (Sun Apr 14 12:53:22 2019)
  • compressing channel-002.obj (Sun Apr 14 12:53:22 2019)
  • UCSF Chimera completed in 3.98 sec (Sun Apr 14 12:53:22 2019)
  • analyzing volume (Sun Apr 14 12:53:22 2019)
  • normal CoM (-32.4, -33.3, -33.4) Å (Sun Apr 14 12:53:22 2019)
  • reduced center failed (Sun Apr 14 12:53:22 2019)
  • volume analysis completed in 158.67 msec (Sun Apr 14 12:53:22 2019)
  • compressing channel-002.mrc (Sun Apr 14 12:53:22 2019)
  • tarring file list (Sun Apr 14 12:53:22 2019)
  • compressing channel-001.mrc (Sun Apr 14 12:53:22 2019)
  • compressing channel-002.mrc (Sun Apr 14 12:53:22 2019)
  • FINISHED (Sun Apr 14 12:53:22 2019)

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Log file display

Show last lines of log file 
Terminal display
		
Message: reduced center failed 
Message: volume analysis completed in 104.26 msec 
Message: compressing channel-001.mrc 
Message: imaging volume (d ... 
himera/'>UCSF Chimera 
/var/www/html/py/appionlib/apChimSnapshot.py 
Message: UCSF Chimera created Jmol compatible file 
Message: compressing channel-002.obj 
Message: UCSF Chimera completed in 3.98 sec 
OBJFILE /var/www/html/3vee/output/2019/apr14/52f/channel-002.obj.gz 
Message: analyzing volume 
Message: normal CoM (-32.4, -33.3, -33.4) Å 
Message: reduced center failed 
Message: volume analysis completed in 158.67 msec 
Message: compressing channel-002.mrc 
Message: tarring file list 
Message: compressing channel-001.mrc 
Message: compressing channel-002.mrc 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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