3v Results for JobId '2019.aug01.09a'

Run Information

biological unit: no
use hetero atoms: no
allow public display: no
grid resolution: high
probestep: 0.1
minprobe: 0.0
pymol: False
waterpdb: False
pdbfile: /var/www/html/3vee/output/uploads/2019.aug01.09a.pdb
maxprobe: 6.0



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Images of your surface at probe size: 0.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 6205 Å3
Surface area: 5982 Å2
Sphericity, Ψ: 0.27
Effective radius: 3.11 Å
Center of Mass: (-4.2, -1.3, 4.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.100:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 6850 Å3
Surface area: 5998 Å2
Sphericity, Ψ: 0.29
Effective radius: 3.43 Å
Center of Mass: (-4.2, -1.3, 4.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.200:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 7502 Å3
Surface area: 5925 Å2
Sphericity, Ψ: 0.31
Effective radius: 3.80 Å
Center of Mass: (-2.2, -1.3, 1.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.300:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8132 Å3
Surface area: 5794 Å2
Sphericity, Ψ: 0.34
Effective radius: 4.21 Å
Center of Mass: (-2.1, -1.3, 1.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.400:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8747 Å3
Surface area: 5647 Å2
Sphericity, Ψ: 0.36
Effective radius: 4.65 Å
Center of Mass: (-3.1, -1.3, 3.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.500:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 9345 Å3
Surface area: 5546 Å2
Sphericity, Ψ: 0.39
Effective radius: 5.06 Å
Center of Mass: (-3.0, -0.3, 3.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.600:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 7721 Å3
Surface area: 5135 Å2
Sphericity, Ψ: 0.37
Effective radius: 4.51 Å
Center of Mass: (-3.2, -0.3, 4.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.700:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8329 Å3
Surface area: 5011 Å2
Sphericity, Ψ: 0.40
Effective radius: 4.99 Å
Center of Mass: (-3.2, -0.3, 3.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.800:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 7783 Å3
Surface area: 4787 Å2
Sphericity, Ψ: 0.40
Effective radius: 4.88 Å
Center of Mass: (-3.3, -0.3, 4.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.900:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 7840 Å3
Surface area: 4618 Å2
Sphericity, Ψ: 0.41
Effective radius: 5.09 Å
Center of Mass: (-3.3, -0.4, 4.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.000:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8354 Å3
Surface area: 4679 Å2
Sphericity, Ψ: 0.43
Effective radius: 5.36 Å
Center of Mass: (-3.2, -0.3, 4.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.100:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8385 Å3
Surface area: 4597 Å2
Sphericity, Ψ: 0.43
Effective radius: 5.47 Å
Center of Mass: (-3.2, -0.4, 4.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.200:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8036 Å3
Surface area: 4390 Å2
Sphericity, Ψ: 0.44
Effective radius: 5.49 Å
Center of Mass: (-3.3, -0.4, 4.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.300:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8081 Å3
Surface area: 4375 Å2
Sphericity, Ψ: 0.45
Effective radius: 5.54 Å
Center of Mass: (-3.3, -0.4, 4.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.400:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8574 Å3
Surface area: 4455 Å2
Sphericity, Ψ: 0.45
Effective radius: 5.77 Å
Center of Mass: (-3.2, -1.4, 4.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.500:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8571 Å3
Surface area: 4356 Å2
Sphericity, Ψ: 0.46
Effective radius: 5.90 Å
Center of Mass: (-3.3, -1.4, 4.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.600:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8114 Å3
Surface area: 4220 Å2
Sphericity, Ψ: 0.46
Effective radius: 5.77 Å
Center of Mass: (-3.4, -1.4, 4.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.700:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8299 Å3
Surface area: 4219 Å2
Sphericity, Ψ: 0.47
Effective radius: 5.90 Å
Center of Mass: (-3.4, -1.4, 4.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.800:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8664 Å3
Surface area: 4269 Å2
Sphericity, Ψ: 0.48
Effective radius: 6.09 Å
Center of Mass: (-3.3, -1.4, 4.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.900:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8299 Å3
Surface area: 4176 Å2
Sphericity, Ψ: 0.47
Effective radius: 5.96 Å
Center of Mass: (-3.4, -1.4, 4.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.000:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8827 Å3
Surface area: 4233 Å2
Sphericity, Ψ: 0.49
Effective radius: 6.26 Å
Center of Mass: (-4.3, -1.3, 4.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.100:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8610 Å3
Surface area: 4126 Å2
Sphericity, Ψ: 0.49
Effective radius: 6.26 Å
Center of Mass: (-4.4, -1.4, 4.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.200:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8686 Å3
Surface area: 4110 Å2
Sphericity, Ψ: 0.50
Effective radius: 6.34 Å
Center of Mass: (-2.5, -1.4, 2.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.300:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8745 Å3
Surface area: 4044 Å2
Sphericity, Ψ: 0.51
Effective radius: 6.49 Å
Center of Mass: (-2.5, -1.4, 2.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.400:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 9196 Å3
Surface area: 4073 Å2
Sphericity, Ψ: 0.52
Effective radius: 6.77 Å
Center of Mass: (-3.5, -1.3, 4.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 9511 Å3
Surface area: 3976 Å2
Sphericity, Ψ: 0.55
Effective radius: 7.18 Å
Center of Mass: (-3.6, -0.3, 4.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.600:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 9257 Å3
Surface area: 3869 Å2
Sphericity, Ψ: 0.55
Effective radius: 7.18 Å
Center of Mass: (-3.7, -0.3, 4.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.700:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 9437 Å3
Surface area: 3730 Å2
Sphericity, Ψ: 0.58
Effective radius: 7.59 Å
Center of Mass: (-3.7, -0.3, 4.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.800:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 9723 Å3
Surface area: 3763 Å2
Sphericity, Ψ: 0.59
Effective radius: 7.75 Å
Center of Mass: (-3.7, -0.3, 4.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.900:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 9838 Å3
Surface area: 3737 Å2
Sphericity, Ψ: 0.59
Effective radius: 7.90 Å
Center of Mass: (-3.7, -0.3, 4.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.000:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 9899 Å3
Surface area: 3720 Å2
Sphericity, Ψ: 0.60
Effective radius: 7.98 Å
Center of Mass: (-3.7, -0.3, 4.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.100:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 9832 Å3
Surface area: 3683 Å2
Sphericity, Ψ: 0.60
Effective radius: 8.01 Å
Center of Mass: (-3.7, -0.3, 4.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.200:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10159 Å3
Surface area: 3706 Å2
Sphericity, Ψ: 0.61
Effective radius: 8.22 Å
Center of Mass: (-3.6, -0.3, 4.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.300:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 10034 Å3
Surface area: 3694 Å2
Sphericity, Ψ: 0.61
Effective radius: 8.15 Å
Center of Mass: (-3.7, -0.3, 4.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.400:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 10053 Å3
Surface area: 3640 Å2
Sphericity, Ψ: 0.62
Effective radius: 8.28 Å
Center of Mass: (-3.6, -1.3, 3.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.500:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 10430 Å3
Surface area: 3701 Å2
Sphericity, Ψ: 0.62
Effective radius: 8.45 Å
Center of Mass: (-3.5, -1.3, 3.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.600:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 10212 Å3
Surface area: 3677 Å2
Sphericity, Ψ: 0.62
Effective radius: 8.33 Å
Center of Mass: (-3.6, -1.3, 3.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.700:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 10201 Å3
Surface area: 3654 Å2
Sphericity, Ψ: 0.62
Effective radius: 8.37 Å
Center of Mass: (-3.6, -1.3, 3.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.800:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10374 Å3
Surface area: 3657 Å2
Sphericity, Ψ: 0.63
Effective radius: 8.51 Å
Center of Mass: (-3.6, -1.3, 3.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.900:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 10537 Å3
Surface area: 3669 Å2
Sphericity, Ψ: 0.63
Effective radius: 8.62 Å
Center of Mass: (-3.5, -1.3, 3.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.000:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 10557 Å3
Surface area: 3666 Å2
Sphericity, Ψ: 0.63
Effective radius: 8.64 Å
Center of Mass: (-4.5, -1.3, 3.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.100:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 10447 Å3
Surface area: 3629 Å2
Sphericity, Ψ: 0.64
Effective radius: 8.63 Å
Center of Mass: (-4.6, -1.3, 3.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.200:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 10524 Å3
Surface area: 3628 Å2
Sphericity, Ψ: 0.64
Effective radius: 8.70 Å
Center of Mass: (-2.5, -1.3, 1.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.300:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 10681 Å3
Surface area: 3646 Å2
Sphericity, Ψ: 0.64
Effective radius: 8.79 Å
Center of Mass: (-2.5, -1.3, 1.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.400:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 10589 Å3
Surface area: 3617 Å2
Sphericity, Ψ: 0.64
Effective radius: 8.78 Å
Center of Mass: (-3.5, -1.3, 3.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.500:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 10824 Å3
Surface area: 3644 Å2
Sphericity, Ψ: 0.65
Effective radius: 8.91 Å
Center of Mass: (-3.4, -0.3, 3.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.600:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 10735 Å3
Surface area: 3607 Å2
Sphericity, Ψ: 0.65
Effective radius: 8.93 Å
Center of Mass: (-3.5, -0.3, 3.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.700:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 10840 Å3
Surface area: 3624 Å2
Sphericity, Ψ: 0.65
Effective radius: 8.97 Å
Center of Mass: (-3.5, -0.3, 3.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.800:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10798 Å3
Surface area: 3611 Å2
Sphericity, Ψ: 0.65
Effective radius: 8.97 Å
Center of Mass: (-3.5, -0.2, 3.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.900:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10898 Å3
Surface area: 3624 Å2
Sphericity, Ψ: 0.66
Effective radius: 9.02 Å
Center of Mass: (-3.4, -0.3, 3.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10898 Å3
Surface area: 3618 Å2
Sphericity, Ψ: 0.66
Effective radius: 9.04 Å
Center of Mass: (-3.4, -0.2, 3.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.100:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 10898 Å3
Surface area: 3587 Å2
Sphericity, Ψ: 0.66
Effective radius: 9.11 Å
Center of Mass: (-3.4, -0.2, 3.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.200:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10924 Å3
Surface area: 3590 Å2
Sphericity, Ψ: 0.66
Effective radius: 9.13 Å
Center of Mass: (-3.4, -0.3, 3.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.300:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 11106 Å3
Surface area: 3591 Å2
Sphericity, Ψ: 0.67
Effective radius: 9.28 Å
Center of Mass: (-3.4, -0.2, 3.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.400:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 11042 Å3
Surface area: 3588 Å2
Sphericity, Ψ: 0.67
Effective radius: 9.23 Å
Center of Mass: (-3.4, -1.2, 3.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.500:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 11174 Å3
Surface area: 3606 Å2
Sphericity, Ψ: 0.67
Effective radius: 9.30 Å
Center of Mass: (-3.4, -1.2, 3.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.600:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 11070 Å3
Surface area: 3571 Å2
Sphericity, Ψ: 0.67
Effective radius: 9.30 Å
Center of Mass: (-3.4, -1.2, 3.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.700:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 11129 Å3
Surface area: 3571 Å2
Sphericity, Ψ: 0.67
Effective radius: 9.35 Å
Center of Mass: (-3.4, -1.2, 3.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.800:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 11107 Å3
Surface area: 3567 Å2
Sphericity, Ψ: 0.67
Effective radius: 9.34 Å
Center of Mass: (-3.4, -1.2, 3.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.900:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 11169 Å3
Surface area: 3577 Å2
Sphericity, Ψ: 0.68
Effective radius: 9.37 Å
Center of Mass: (-3.4, -1.2, 3.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 6.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 11388 Å3
Surface area: 3596 Å2
Sphericity, Ψ: 0.68
Effective radius: 9.50 Å
Center of Mass: (-4.3, -1.2, 3.6) Å

Downloadable files of your surface:



Downloadable files of your surface:

Show running log



Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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