3v Results for JobId '2019.aug01.1c1'

Run Information

biological unit: no
use hetero atoms: no
allow public display: no
grid resolution: high
probestep: 0.1
minprobe: 0.0
pymol: False
waterpdb: False
pdbfile: /var/www/html/3vee/output/uploads/2019.aug01.1c1.pdb
maxprobe: 6.0



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Images of your surface at probe size: 0.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 6207 Å3
Surface area: 5983 Å2
Sphericity, Ψ: 0.27
Effective radius: 3.11 Å
Center of Mass: (2.1, -1.3, -6.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.100:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 6856 Å3
Surface area: 5989 Å2
Sphericity, Ψ: 0.29
Effective radius: 3.43 Å
Center of Mass: (4.1, -1.3, -7.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.200:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 7502 Å3
Surface area: 5929 Å2
Sphericity, Ψ: 0.31
Effective radius: 3.80 Å
Center of Mass: (4.1, -1.3, -6.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.300:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 8133 Å3
Surface area: 5785 Å2
Sphericity, Ψ: 0.34
Effective radius: 4.22 Å
Center of Mass: (4.1, -1.3, -7.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.400:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 8751 Å3
Surface area: 5641 Å2
Sphericity, Ψ: 0.36
Effective radius: 4.65 Å
Center of Mass: (3.0, -1.3, -7.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 9342 Å3
Surface area: 5538 Å2
Sphericity, Ψ: 0.39
Effective radius: 5.06 Å
Center of Mass: (3.0, -0.3, -7.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.600:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 7728 Å3
Surface area: 5127 Å2
Sphericity, Ψ: 0.37
Effective radius: 4.52 Å
Center of Mass: (3.2, -0.3, -8.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.700:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 8328 Å3
Surface area: 5024 Å2
Sphericity, Ψ: 0.40
Effective radius: 4.97 Å
Center of Mass: (3.1, -0.3, -7.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.800:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 7772 Å3
Surface area: 4794 Å2
Sphericity, Ψ: 0.40
Effective radius: 4.86 Å
Center of Mass: (3.2, -0.3, -8.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.900:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 7827 Å3
Surface area: 4635 Å2
Sphericity, Ψ: 0.41
Effective radius: 5.07 Å
Center of Mass: (3.2, -0.4, -8.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 8354 Å3
Surface area: 4670 Å2
Sphericity, Ψ: 0.43
Effective radius: 5.37 Å
Center of Mass: (3.2, -0.3, -8.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.100:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 8389 Å3
Surface area: 4596 Å2
Sphericity, Ψ: 0.43
Effective radius: 5.48 Å
Center of Mass: (3.2, -0.3, -8.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.200:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 8027 Å3
Surface area: 4407 Å2
Sphericity, Ψ: 0.44
Effective radius: 5.46 Å
Center of Mass: (3.3, -0.4, -8.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.300:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 8075 Å3
Surface area: 4376 Å2
Sphericity, Ψ: 0.44
Effective radius: 5.54 Å
Center of Mass: (3.3, -0.4, -8.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.400:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 8579 Å3
Surface area: 4452 Å2
Sphericity, Ψ: 0.46
Effective radius: 5.78 Å
Center of Mass: (3.2, -1.4, -8.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 8581 Å3
Surface area: 4353 Å2
Sphericity, Ψ: 0.47
Effective radius: 5.91 Å
Center of Mass: (3.2, -1.4, -8.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.600:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 8109 Å3
Surface area: 4227 Å2
Sphericity, Ψ: 0.46
Effective radius: 5.75 Å
Center of Mass: (3.3, -1.4, -8.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.700:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 8299 Å3
Surface area: 4232 Å2
Sphericity, Ψ: 0.47
Effective radius: 5.88 Å
Center of Mass: (3.3, -1.4, -8.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.800:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 8669 Å3
Surface area: 4267 Å2
Sphericity, Ψ: 0.48
Effective radius: 6.09 Å
Center of Mass: (3.3, -1.3, -8.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.900:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 8302 Å3
Surface area: 4165 Å2
Sphericity, Ψ: 0.48
Effective radius: 5.98 Å
Center of Mass: (3.3, -1.4, -8.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 8840 Å3
Surface area: 4218 Å2
Sphericity, Ψ: 0.49
Effective radius: 6.29 Å
Center of Mass: (2.3, -1.3, -6.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.100:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 8625 Å3
Surface area: 4131 Å2
Sphericity, Ψ: 0.49
Effective radius: 6.26 Å
Center of Mass: (4.4, -1.4, -7.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.200:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 8670 Å3
Surface area: 4108 Å2
Sphericity, Ψ: 0.50
Effective radius: 6.33 Å
Center of Mass: (4.4, -1.3, -7.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.300:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 8735 Å3
Surface area: 4051 Å2
Sphericity, Ψ: 0.51
Effective radius: 6.47 Å
Center of Mass: (4.5, -1.4, -8.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.400:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 9199 Å3
Surface area: 4067 Å2
Sphericity, Ψ: 0.52
Effective radius: 6.79 Å
Center of Mass: (3.5, -1.3, -8.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 9528 Å3
Surface area: 3955 Å2
Sphericity, Ψ: 0.55
Effective radius: 7.23 Å
Center of Mass: (3.5, -0.3, -8.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.600:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 9261 Å3
Surface area: 3863 Å2
Sphericity, Ψ: 0.55
Effective radius: 7.19 Å
Center of Mass: (3.6, -0.3, -8.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.700:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 9463 Å3
Surface area: 3723 Å2
Sphericity, Ψ: 0.58
Effective radius: 7.63 Å
Center of Mass: (3.7, -0.3, -8.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.800:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 9764 Å3
Surface area: 3745 Å2
Sphericity, Ψ: 0.59
Effective radius: 7.82 Å
Center of Mass: (3.6, -0.3, -8.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.900:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 9845 Å3
Surface area: 3720 Å2
Sphericity, Ψ: 0.60
Effective radius: 7.94 Å
Center of Mass: (3.6, -0.3, -8.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 9899 Å3
Surface area: 3716 Å2
Sphericity, Ψ: 0.60
Effective radius: 7.99 Å
Center of Mass: (3.6, -0.3, -8.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.100:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 9837 Å3
Surface area: 3681 Å2
Sphericity, Ψ: 0.60
Effective radius: 8.02 Å
Center of Mass: (3.6, -0.3, -8.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.200:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10154 Å3
Surface area: 3716 Å2
Sphericity, Ψ: 0.61
Effective radius: 8.20 Å
Center of Mass: (3.6, -0.3, -8.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.300:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10028 Å3
Surface area: 3693 Å2
Sphericity, Ψ: 0.61
Effective radius: 8.15 Å
Center of Mass: (3.6, -0.3, -8.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.400:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10039 Å3
Surface area: 3637 Å2
Sphericity, Ψ: 0.62
Effective radius: 8.28 Å
Center of Mass: (3.6, -1.3, -7.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10408 Å3
Surface area: 3716 Å2
Sphericity, Ψ: 0.62
Effective radius: 8.40 Å
Center of Mass: (3.5, -1.3, -7.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.600:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10217 Å3
Surface area: 3670 Å2
Sphericity, Ψ: 0.62
Effective radius: 8.35 Å
Center of Mass: (3.6, -1.3, -7.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.700:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10191 Å3
Surface area: 3658 Å2
Sphericity, Ψ: 0.62
Effective radius: 8.36 Å
Center of Mass: (3.6, -1.3, -7.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.800:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10361 Å3
Surface area: 3661 Å2
Sphericity, Ψ: 0.63
Effective radius: 8.49 Å
Center of Mass: (3.5, -1.3, -7.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.900:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10530 Å3
Surface area: 3669 Å2
Sphericity, Ψ: 0.63
Effective radius: 8.61 Å
Center of Mass: (3.5, -1.3, -7.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10560 Å3
Surface area: 3677 Å2
Sphericity, Ψ: 0.63
Effective radius: 8.62 Å
Center of Mass: (2.4, -1.3, -5.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.100:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10430 Å3
Surface area: 3639 Å2
Sphericity, Ψ: 0.63
Effective radius: 8.60 Å
Center of Mass: (4.5, -1.3, -6.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.200:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10519 Å3
Surface area: 3629 Å2
Sphericity, Ψ: 0.64
Effective radius: 8.69 Å
Center of Mass: (4.5, -1.3, -6.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.300:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10690 Å3
Surface area: 3638 Å2
Sphericity, Ψ: 0.65
Effective radius: 8.82 Å
Center of Mass: (4.4, -1.3, -7.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.400:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10592 Å3
Surface area: 3620 Å2
Sphericity, Ψ: 0.64
Effective radius: 8.78 Å
Center of Mass: (3.4, -1.3, -7.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10816 Å3
Surface area: 3647 Å2
Sphericity, Ψ: 0.65
Effective radius: 8.90 Å
Center of Mass: (3.4, -0.3, -7.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.600:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10735 Å3
Surface area: 3599 Å2
Sphericity, Ψ: 0.65
Effective radius: 8.95 Å
Center of Mass: (3.4, -0.3, -7.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.700:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10841 Å3
Surface area: 3620 Å2
Sphericity, Ψ: 0.65
Effective radius: 8.98 Å
Center of Mass: (3.4, -0.3, -7.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.800:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10800 Å3
Surface area: 3607 Å2
Sphericity, Ψ: 0.65
Effective radius: 8.98 Å
Center of Mass: (3.4, -0.2, -7.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.900:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10894 Å3
Surface area: 3632 Å2
Sphericity, Ψ: 0.65
Effective radius: 9.00 Å
Center of Mass: (3.4, -0.3, -7.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10914 Å3
Surface area: 3607 Å2
Sphericity, Ψ: 0.66
Effective radius: 9.08 Å
Center of Mass: (3.4, -0.2, -7.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.100:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10884 Å3
Surface area: 3590 Å2
Sphericity, Ψ: 0.66
Effective radius: 9.10 Å
Center of Mass: (3.4, -0.2, -7.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.200:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 10923 Å3
Surface area: 3591 Å2
Sphericity, Ψ: 0.66
Effective radius: 9.12 Å
Center of Mass: (3.4, -0.3, -7.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.300:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 11084 Å3
Surface area: 3596 Å2
Sphericity, Ψ: 0.67
Effective radius: 9.25 Å
Center of Mass: (3.3, -0.2, -7.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.400:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 11040 Å3
Surface area: 3587 Å2
Sphericity, Ψ: 0.67
Effective radius: 9.23 Å
Center of Mass: (3.3, -1.2, -7.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 11175 Å3
Surface area: 3605 Å2
Sphericity, Ψ: 0.67
Effective radius: 9.30 Å
Center of Mass: (3.3, -1.2, -7.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.600:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 11057 Å3
Surface area: 3573 Å2
Sphericity, Ψ: 0.67
Effective radius: 9.28 Å
Center of Mass: (3.3, -1.2, -7.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.700:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 11132 Å3
Surface area: 3561 Å2
Sphericity, Ψ: 0.68
Effective radius: 9.38 Å
Center of Mass: (3.3, -1.2, -7.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.800:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 11087 Å3
Surface area: 3570 Å2
Sphericity, Ψ: 0.67
Effective radius: 9.32 Å
Center of Mass: (3.3, -1.2, -7.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.900:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 11187 Å3
Surface area: 3575 Å2
Sphericity, Ψ: 0.68
Effective radius: 9.39 Å
Center of Mass: (3.3, -1.2, -7.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 6.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 11375 Å3
Surface area: 3597 Å2
Sphericity, Ψ: 0.68
Effective radius: 9.49 Å
Center of Mass: (2.3, -1.2, -5.6) Å

Downloadable files of your surface:



Downloadable files of your surface:

Show running log



Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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