3v Results for JobId '2019.aug01.f79'

Run Information

biological unit: no
use hetero atoms: no
allow public display: no
grid resolution: low
probestep: 0.1
minprobe: 0.0
pymol: False
waterpdb: False
pdbfile: /var/www/html/3vee/output/uploads/2019.aug01.f79.pdb
maxprobe: 6.0



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Images of your surface at probe size: 0.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 6204 Å3
Surface area: 5660 Å2
Sphericity, Ψ: 0.29
Effective radius: 3.29 Å
Center of Mass: (-3.2, -0.3, 3.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.100:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 6852 Å3
Surface area: 5623 Å2
Sphericity, Ψ: 0.31
Effective radius: 3.66 Å
Center of Mass: (-3.2, -0.3, 2.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.200:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 7518 Å3
Surface area: 5608 Å2
Sphericity, Ψ: 0.33
Effective radius: 4.02 Å
Center of Mass: (-3.1, -0.3, 2.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.300:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 8119 Å3
Surface area: 5553 Å2
Sphericity, Ψ: 0.35
Effective radius: 4.39 Å
Center of Mass: (-3.2, -0.3, 2.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.400:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 8740 Å3
Surface area: 5384 Å2
Sphericity, Ψ: 0.38
Effective radius: 4.87 Å
Center of Mass: (-3.1, -2.3, 2.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.500:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 9373 Å3
Surface area: 5255 Å2
Sphericity, Ψ: 0.41
Effective radius: 5.35 Å
Center of Mass: (-3.0, -2.3, 2.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.600:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 9932 Å3
Surface area: 5239 Å2
Sphericity, Ψ: 0.43
Effective radius: 5.69 Å
Center of Mass: (-3.0, -2.3, 2.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.700:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 10479 Å3
Surface area: 5191 Å2
Sphericity, Ψ: 0.45
Effective radius: 6.06 Å
Center of Mass: (-2.9, -2.3, 2.6) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.800:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11064 Å3
Surface area: 5208 Å2
Sphericity, Ψ: 0.46
Effective radius: 6.37 Å
Center of Mass: (-2.9, -2.2, 2.5) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.900:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11665 Å3
Surface area: 5206 Å2
Sphericity, Ψ: 0.48
Effective radius: 6.72 Å
Center of Mass: (-2.8, -2.2, 2.4) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.000:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 12224 Å3
Surface area: 5262 Å2
Sphericity, Ψ: 0.49
Effective radius: 6.97 Å
Center of Mass: (-4.8, -2.2, 2.4) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.100:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 8616 Å3
Surface area: 4397 Å2
Sphericity, Ψ: 0.46
Effective radius: 5.88 Å
Center of Mass: (-5.3, -2.4, 3.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.200:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 9173 Å3
Surface area: 4454 Å2
Sphericity, Ψ: 0.48
Effective radius: 6.18 Å
Center of Mass: (-5.2, -2.3, 3.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.300:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 9694 Å3
Surface area: 4478 Å2
Sphericity, Ψ: 0.49
Effective radius: 6.49 Å
Center of Mass: (-5.2, -2.3, 2.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.400:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 10192 Å3
Surface area: 4567 Å2
Sphericity, Ψ: 0.50
Effective radius: 6.69 Å
Center of Mass: (-5.1, -2.3, 2.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.500:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 8713 Å3
Surface area: 4253 Å2
Sphericity, Ψ: 0.48
Effective radius: 6.15 Å
Center of Mass: (-5.3, -2.4, 3.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.600:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 9210 Å3
Surface area: 4354 Å2
Sphericity, Ψ: 0.49
Effective radius: 6.35 Å
Center of Mass: (-5.2, -2.3, 3.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.700:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 9739 Å3
Surface area: 4424 Å2
Sphericity, Ψ: 0.50
Effective radius: 6.60 Å
Center of Mass: (-5.1, -2.3, 2.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.800:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 9295 Å3
Surface area: 4305 Å2
Sphericity, Ψ: 0.50
Effective radius: 6.48 Å
Center of Mass: (-5.3, -2.3, 3.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.900:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 9824 Å3
Surface area: 4381 Å2
Sphericity, Ψ: 0.51
Effective radius: 6.73 Å
Center of Mass: (-5.2, -2.3, 2.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.000:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 10408 Å3
Surface area: 4402 Å2
Sphericity, Ψ: 0.52
Effective radius: 7.09 Å
Center of Mass: (-5.2, -2.3, 2.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.100:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 9946 Å3
Surface area: 4287 Å2
Sphericity, Ψ: 0.52
Effective radius: 6.96 Å
Center of Mass: (-5.4, -2.3, 3.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.200:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 10471 Å3
Surface area: 4310 Å2
Sphericity, Ψ: 0.54
Effective radius: 7.29 Å
Center of Mass: (-5.3, -2.3, 2.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.300:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 9537 Å3
Surface area: 3914 Å2
Sphericity, Ψ: 0.56
Effective radius: 7.31 Å
Center of Mass: (-5.5, -2.4, 3.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.400:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 10021 Å3
Surface area: 3966 Å2
Sphericity, Ψ: 0.57
Effective radius: 7.58 Å
Center of Mass: (-5.5, -2.3, 3.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 9766 Å3
Surface area: 3800 Å2
Sphericity, Ψ: 0.58
Effective radius: 7.71 Å
Center of Mass: (-5.7, -2.3, 3.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.600:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 10246 Å3
Surface area: 3880 Å2
Sphericity, Ψ: 0.59
Effective radius: 7.92 Å
Center of Mass: (-5.5, -2.3, 3.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.700:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 10795 Å3
Surface area: 3877 Å2
Sphericity, Ψ: 0.61
Effective radius: 8.35 Å
Center of Mass: (-5.5, -2.3, 2.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.800:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 11300 Å3
Surface area: 3887 Å2
Sphericity, Ψ: 0.63
Effective radius: 8.72 Å
Center of Mass: (-5.4, -2.3, 2.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.900:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 10799 Å3
Surface area: 3793 Å2
Sphericity, Ψ: 0.62
Effective radius: 8.54 Å
Center of Mass: (-5.5, -2.3, 2.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.000:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11237 Å3
Surface area: 3853 Å2
Sphericity, Ψ: 0.63
Effective radius: 8.75 Å
Center of Mass: (-5.4, -2.2, 2.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.100:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 10592 Å3
Surface area: 3752 Å2
Sphericity, Ψ: 0.62
Effective radius: 8.47 Å
Center of Mass: (-5.6, -2.3, 2.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.200:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 10413 Å3
Surface area: 3684 Å2
Sphericity, Ψ: 0.63
Effective radius: 8.48 Å
Center of Mass: (-1.6, -2.3, -1.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.300:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 10887 Å3
Surface area: 3733 Å2
Sphericity, Ψ: 0.64
Effective radius: 8.75 Å
Center of Mass: (-1.5, -2.3, -1.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.400:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 10803 Å3
Surface area: 3689 Å2
Sphericity, Ψ: 0.64
Effective radius: 8.78 Å
Center of Mass: (-3.5, -2.3, 2.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.500:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11003 Å3
Surface area: 3725 Å2
Sphericity, Ψ: 0.64
Effective radius: 8.86 Å
Center of Mass: (-3.4, -0.3, 2.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.600:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 11385 Å3
Surface area: 3785 Å2
Sphericity, Ψ: 0.65
Effective radius: 9.02 Å
Center of Mass: (-3.3, -0.2, 2.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.700:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11113 Å3
Surface area: 3699 Å2
Sphericity, Ψ: 0.65
Effective radius: 9.01 Å
Center of Mass: (-3.4, -0.3, 2.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.800:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 10807 Å3
Surface area: 3656 Å2
Sphericity, Ψ: 0.65
Effective radius: 8.87 Å
Center of Mass: (-3.5, -0.3, 2.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.900:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 11215 Å3
Surface area: 3725 Å2
Sphericity, Ψ: 0.65
Effective radius: 9.03 Å
Center of Mass: (-3.4, -0.3, 2.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.000:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11633 Å3
Surface area: 3770 Å2
Sphericity, Ψ: 0.66
Effective radius: 9.26 Å
Center of Mass: (-3.3, -0.2, 2.6) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.100:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11774 Å3
Surface area: 3762 Å2
Sphericity, Ψ: 0.67
Effective radius: 9.39 Å
Center of Mass: (-3.3, -0.2, 2.6) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.200:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11227 Å3
Surface area: 3627 Å2
Sphericity, Ψ: 0.67
Effective radius: 9.29 Å
Center of Mass: (-3.4, -0.2, 2.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.300:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11064 Å3
Surface area: 3634 Å2
Sphericity, Ψ: 0.66
Effective radius: 9.13 Å
Center of Mass: (-3.4, -0.3, 2.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.400:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11129 Å3
Surface area: 3651 Å2
Sphericity, Ψ: 0.66
Effective radius: 9.14 Å
Center of Mass: (-3.4, -2.3, 2.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.500:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11248 Å3
Surface area: 3617 Å2
Sphericity, Ψ: 0.67
Effective radius: 9.33 Å
Center of Mass: (-3.4, -2.3, 2.6) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.600:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11126 Å3
Surface area: 3555 Å2
Sphericity, Ψ: 0.68
Effective radius: 9.39 Å
Center of Mass: (-3.4, -2.3, 2.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.700:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 11265 Å3
Surface area: 3636 Å2
Sphericity, Ψ: 0.67
Effective radius: 9.29 Å
Center of Mass: (-3.4, -2.2, 2.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.800:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 11674 Å3
Surface area: 3669 Å2
Sphericity, Ψ: 0.68
Effective radius: 9.54 Å
Center of Mass: (-3.3, -2.2, 2.6) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.900:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 11557 Å3
Surface area: 3604 Å2
Sphericity, Ψ: 0.69
Effective radius: 9.62 Å
Center of Mass: (-3.3, -2.2, 2.6) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.000:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11907 Å3
Surface area: 3648 Å2
Sphericity, Ψ: 0.69
Effective radius: 9.79 Å
Center of Mass: (-5.3, -2.2, 2.6) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.100:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11174 Å3
Surface area: 3589 Å2
Sphericity, Ψ: 0.67
Effective radius: 9.34 Å
Center of Mass: (-5.3, -2.3, 2.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.200:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 11299 Å3
Surface area: 3589 Å2
Sphericity, Ψ: 0.68
Effective radius: 9.44 Å
Center of Mass: (-5.4, -2.3, 2.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.300:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 11754 Å3
Surface area: 3621 Å2
Sphericity, Ψ: 0.69
Effective radius: 9.74 Å
Center of Mass: (-5.2, -2.2, 2.5) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.400:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 11333 Å3
Surface area: 3564 Å2
Sphericity, Ψ: 0.68
Effective radius: 9.54 Å
Center of Mass: (-5.3, -2.2, 2.6) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 11430 Å3
Surface area: 3563 Å2
Sphericity, Ψ: 0.69
Effective radius: 9.62 Å
Center of Mass: (-5.3, -2.2, 2.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.600:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 11787 Å3
Surface area: 3623 Å2
Sphericity, Ψ: 0.69
Effective radius: 9.76 Å
Center of Mass: (-5.2, -2.2, 2.6) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.700:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11947 Å3
Surface area: 3626 Å2
Sphericity, Ψ: 0.70
Effective radius: 9.88 Å
Center of Mass: (-5.2, -2.2, 2.5) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.800:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11777 Å3
Surface area: 3606 Å2
Sphericity, Ψ: 0.69
Effective radius: 9.80 Å
Center of Mass: (-5.3, -2.2, 2.6) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.900:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11842 Å3
Surface area: 3614 Å2
Sphericity, Ψ: 0.70
Effective radius: 9.83 Å
Center of Mass: (-5.2, -2.2, 2.5) Å

Downloadable files of your surface:




Images of your surface at probe size: 6.000:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 11969 Å3
Surface area: 3623 Å2
Sphericity, Ψ: 0.70
Effective radius: 9.91 Å
Center of Mass: (-5.2, -2.2, 2.5) Å

Downloadable files of your surface:



Downloadable files of your surface:

Show running log



Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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