3v Running Log for JobId '2019.jul11.1e2'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=150.164.20.33 (Thu Jul 11 16:16:09 2019)
  • converting pdb into xyzr (Thu Jul 11 16:16:09 2019)
  • completed conversion of PDB file: 2019.jul11.1e2.pdb (size: 40k) (Thu Jul 11 16:16:10 2019)
  • converted 1270 atoms of 1270 atoms (Thu Jul 11 16:16:10 2019)
  • found 1270 atoms in pdb (Thu Jul 11 16:16:10 2019)
  • running 3v all channel program (Thu Jul 11 16:16:10 2019)
  • created 2 channel files (Thu Jul 11 16:16:11 2019)
  • Download MRC files: 1 2 (Thu Jul 11 16:16:11 2019)
  • imaging volume (download mrc) with UCSF Chimera (Thu Jul 11 16:16:11 2019)
  • UCSF Chimera created Jmol compatible file (Thu Jul 11 16:16:14 2019)
  • compressing channel-001.obj (Thu Jul 11 16:16:14 2019)
  • UCSF Chimera completed in 3.0 sec (Thu Jul 11 16:16:14 2019)
  • analyzing volume (Thu Jul 11 16:16:14 2019)
  • normal CoM (-23.5, -19.9, -19.5) Å (Thu Jul 11 16:16:14 2019)
  • reduced center failed (Thu Jul 11 16:16:14 2019)
  • volume analysis completed in 178.3 msec (Thu Jul 11 16:16:14 2019)
  • compressing channel-001.mrc (Thu Jul 11 16:16:14 2019)
  • imaging volume (download mrc) with UCSF Chimera (Thu Jul 11 16:16:14 2019)
  • UCSF Chimera created Jmol compatible file (Thu Jul 11 16:16:16 2019)
  • compressing channel-002.obj (Thu Jul 11 16:16:16 2019)
  • UCSF Chimera completed in 2.31 sec (Thu Jul 11 16:16:16 2019)
  • analyzing volume (Thu Jul 11 16:16:16 2019)
  • normal CoM (-28.7, -29.0, -27.2) Å (Thu Jul 11 16:16:16 2019)
  • reduced center failed (Thu Jul 11 16:16:16 2019)
  • volume analysis completed in 10.35 msec (Thu Jul 11 16:16:16 2019)
  • compressing channel-002.mrc (Thu Jul 11 16:16:16 2019)
  • tarring file list (Thu Jul 11 16:16:16 2019)
  • compressing channel-001.mrc (Thu Jul 11 16:16:16 2019)
  • compressing channel-002.mrc (Thu Jul 11 16:16:16 2019)
  • FINISHED (Thu Jul 11 16:16:16 2019)

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Log file display

Show last lines of log file 
Terminal display
		
Message: reduced center failed 
Message: volume analysis completed in 178.3 msec 
Message: compressing channel-001.mrc 
Message: imaging volume (d ... 
himera/'>UCSF Chimera 
/var/www/html/py/appionlib/apChimSnapshot.py 
Message: UCSF Chimera created Jmol compatible file 
Message: compressing channel-002.obj 
Message: UCSF Chimera completed in 2.31 sec 
OBJFILE /var/www/html/3vee/output/2019/jul11/1e2/channel-002.obj.gz 
Message: analyzing volume 
Message: normal CoM (-28.7, -29.0, -27.2) Å 
Message: reduced center failed 
Message: volume analysis completed in 10.35 msec 
Message: compressing channel-002.mrc 
Message: tarring file list 
Message: compressing channel-001.mrc 
Message: compressing channel-002.mrc 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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