3v Running Log for JobId '2019.jun09.741'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=124.17.103.130 (Mon Jun 10 01:29:49 2019)
  • converting pdb into xyzr (Mon Jun 10 01:29:50 2019)
  • completed conversion of PDB file: 2019.jun09.741.pdb (size: 197k) (Mon Jun 10 01:29:52 2019)
  • converted 6310 atoms of 6310 atoms (Mon Jun 10 01:29:52 2019)
  • found 6310 atoms in pdb (Mon Jun 10 01:29:52 2019)
  • running 3v all channel program (Mon Jun 10 01:29:52 2019)
  • created 2 channel files (Mon Jun 10 01:29:54 2019)
  • Download MRC files: 1 2 (Mon Jun 10 01:29:54 2019)
  • imaging volume (download mrc) with UCSF Chimera (Mon Jun 10 01:29:54 2019)
  • UCSF Chimera created Jmol compatible file (Mon Jun 10 01:29:58 2019)
  • compressing channel-001.obj (Mon Jun 10 01:29:58 2019)
  • UCSF Chimera completed in 4.83 sec (Mon Jun 10 01:29:59 2019)
  • analyzing volume (Mon Jun 10 01:29:59 2019)
  • normal CoM (-43.3, -42.5, -39.2) Å (Mon Jun 10 01:29:59 2019)
  • reduced center failed (Mon Jun 10 01:29:59 2019)
  • volume analysis completed in 22.78 msec (Mon Jun 10 01:29:59 2019)
  • compressing channel-001.mrc (Mon Jun 10 01:29:59 2019)
  • imaging volume (download mrc) with UCSF Chimera (Mon Jun 10 01:29:59 2019)
  • UCSF Chimera created Jmol compatible file (Mon Jun 10 01:30:04 2019)
  • compressing channel-002.obj (Mon Jun 10 01:30:04 2019)
  • UCSF Chimera completed in 5.75 sec (Mon Jun 10 01:30:04 2019)
  • analyzing volume (Mon Jun 10 01:30:04 2019)
  • normal CoM (-46.4, -45.5, -41.1) Å (Mon Jun 10 01:30:04 2019)
  • reduced center failed (Mon Jun 10 01:30:04 2019)
  • volume analysis completed in 7.55 msec (Mon Jun 10 01:30:04 2019)
  • compressing channel-002.mrc (Mon Jun 10 01:30:04 2019)
  • tarring file list (Mon Jun 10 01:30:04 2019)
  • compressing channel-001.mrc (Mon Jun 10 01:30:05 2019)
  • compressing channel-002.mrc (Mon Jun 10 01:30:05 2019)
  • FINISHED (Mon Jun 10 01:30:05 2019)

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Log file display

Show last lines of log file 
Terminal display
		
Message: reduced center failed 
Message: volume analysis completed in 22.78 msec 
Message: compressing channel-001.mrc 
Message: imaging volume (d ... 
himera/'>UCSF Chimera 
/var/www/html/py/appionlib/apChimSnapshot.py 
Message: UCSF Chimera created Jmol compatible file 
Message: compressing channel-002.obj 
Message: UCSF Chimera completed in 5.75 sec 
OBJFILE /var/www/html/3vee/output/2019/jun09/741/channel-002.obj.gz 
Message: analyzing volume 
Message: normal CoM (-46.4, -45.5, -41.1) Å 
Message: reduced center failed 
Message: volume analysis completed in 7.55 msec 
Message: compressing channel-002.mrc 
Message: tarring file list 
Message: compressing channel-001.mrc 
Message: compressing channel-002.mrc 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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