3v Running Log for JobId '2019.jun11.4e0'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=35.16.71.154 (Tue Jun 11 14:22:31 2019)
  • converting pdb into xyzr (Tue Jun 11 14:22:31 2019)
  • completed conversion of PDB file: 2019.jun11.4e0.pdb (size: 1056k) (Tue Jun 11 14:22:55 2019)
  • converted 33792 atoms of 33792 atoms (Tue Jun 11 14:22:55 2019)
  • found 33792 atoms in pdb (Tue Jun 11 14:22:55 2019)
  • running 3v all channel program (Tue Jun 11 14:22:55 2019)
  • created 2 channel files (Tue Jun 11 14:23:09 2019)
  • Download MRC files: 1 2 (Tue Jun 11 14:23:09 2019)
  • imaging volume (download mrc) with UCSF Chimera (Tue Jun 11 14:23:09 2019)
  • UCSF Chimera created Jmol compatible file (Tue Jun 11 14:23:24 2019)
  • compressing channel-001.obj (Tue Jun 11 14:23:24 2019)
  • UCSF Chimera completed in 14.65 sec (Tue Jun 11 14:23:24 2019)
  • analyzing volume (Tue Jun 11 14:23:24 2019)
  • normal CoM (-62.3, -79.1, -71.4) Å (Tue Jun 11 14:23:24 2019)
  • reduced center failed (Tue Jun 11 14:23:24 2019)
  • volume analysis completed in 184.06 msec (Tue Jun 11 14:23:24 2019)
  • compressing channel-001.mrc (Tue Jun 11 14:23:24 2019)
  • imaging volume (download mrc) with UCSF Chimera (Tue Jun 11 14:23:24 2019)
  • UCSF Chimera created Jmol compatible file (Tue Jun 11 14:23:39 2019)
  • compressing channel-002.obj (Tue Jun 11 14:23:39 2019)
  • UCSF Chimera completed in 14.78 sec (Tue Jun 11 14:23:39 2019)
  • analyzing volume (Tue Jun 11 14:23:39 2019)
  • normal CoM (-63.5, -87.7, -72.4) Å (Tue Jun 11 14:23:39 2019)
  • reduced center failed (Tue Jun 11 14:23:39 2019)
  • volume analysis completed in 174.07 msec (Tue Jun 11 14:23:39 2019)
  • compressing channel-002.mrc (Tue Jun 11 14:23:39 2019)
  • tarring file list (Tue Jun 11 14:23:39 2019)
  • compressing channel-001.mrc (Tue Jun 11 14:23:39 2019)
  • compressing channel-002.mrc (Tue Jun 11 14:23:39 2019)
  • FINISHED (Tue Jun 11 14:23:39 2019)

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Log file display

Show last lines of log file 
Terminal display
		
Message: reduced center failed 
Message: volume analysis completed in 184.06 msec 
Message: compressing channel-001.mrc 
Message: imaging volume (d ... 
himera/'>UCSF Chimera 
/var/www/html/py/appionlib/apChimSnapshot.py 
Message: UCSF Chimera created Jmol compatible file 
Message: compressing channel-002.obj 
Message: UCSF Chimera completed in 14.78 sec 
OBJFILE /var/www/html/3vee/output/2019/jun11/4e0/channel-002.obj.gz 
Message: analyzing volume 
Message: normal CoM (-63.5, -87.7, -72.4) Å 
Message: reduced center failed 
Message: volume analysis completed in 174.07 msec 
Message: compressing channel-002.mrc 
Message: tarring file list 
Message: compressing channel-001.mrc 
Message: compressing channel-002.mrc 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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