3v Running Log for JobId '2019.mar14.270'

Program is still running, progress is shown below

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  • host ip address=69.124.71.174 (Thu Mar 14 20:22:47 2019)
  • converting pdb into xyzr (Thu Mar 14 20:22:47 2019)
  • completed conversion of PDB file: 2019.mar14.270.pdb (size: 156k) (Thu Mar 14 20:22:51 2019)
  • converted 4986 atoms of 4986 atoms (Thu Mar 14 20:22:51 2019)
  • found 4986 atoms in pdb (Thu Mar 14 20:22:51 2019)
  • running 3v all channel program (Thu Mar 14 20:22:51 2019)
  • created 2 channel files (Thu Mar 14 20:22:53 2019)
  • Download MRC files: 1 2 (Thu Mar 14 20:22:53 2019)
  • imaging volume (download mrc) with UCSF Chimera (Thu Mar 14 20:22:53 2019)
  • UCSF Chimera created Jmol compatible file (Thu Mar 14 20:22:56 2019)
  • compressing channel-001.obj (Thu Mar 14 20:22:56 2019)
  • UCSF Chimera completed in 3.59 sec (Thu Mar 14 20:22:56 2019)
  • analyzing volume (Thu Mar 14 20:22:56 2019)
  • normal CoM (-43.8, -48.8, -47.9) Å (Thu Mar 14 20:22:56 2019)
  • reduced center failed (Thu Mar 14 20:22:56 2019)
  • volume analysis completed in 17.09 msec (Thu Mar 14 20:22:56 2019)
  • compressing channel-001.mrc (Thu Mar 14 20:22:56 2019)
  • imaging volume (download mrc) with UCSF Chimera (Thu Mar 14 20:22:57 2019)
  • UCSF Chimera created Jmol compatible file (Thu Mar 14 20:23:00 2019)
  • compressing channel-002.obj (Thu Mar 14 20:23:00 2019)
  • UCSF Chimera completed in 3.43 sec (Thu Mar 14 20:23:00 2019)
  • analyzing volume (Thu Mar 14 20:23:00 2019)
  • normal CoM (-44.9, -48.6, -50.4) Å (Thu Mar 14 20:23:00 2019)
  • reduced center failed (Thu Mar 14 20:23:00 2019)
  • volume analysis completed in 11.37 msec (Thu Mar 14 20:23:00 2019)
  • compressing channel-002.mrc (Thu Mar 14 20:23:00 2019)
  • tarring file list (Thu Mar 14 20:23:00 2019)
  • compressing channel-001.mrc (Thu Mar 14 20:23:00 2019)
  • compressing channel-002.mrc (Thu Mar 14 20:23:00 2019)
  • FINISHED (Thu Mar 14 20:23:00 2019)

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Log file display

Show last lines of log file 
Terminal display
		
Message: reduced center failed 
Message: volume analysis completed in 17.09 msec 
Message: compressing channel-001.mrc 
Message: imaging volume (d ... 
himera/'>UCSF Chimera 
/var/www/html/py/appionlib/apChimSnapshot.py 
Message: UCSF Chimera created Jmol compatible file 
Message: compressing channel-002.obj 
Message: UCSF Chimera completed in 3.43 sec 
OBJFILE /var/www/html/3vee/output/2019/mar14/270/channel-002.obj.gz 
Message: analyzing volume 
Message: normal CoM (-44.9, -48.6, -50.4) Å 
Message: reduced center failed 
Message: volume analysis completed in 11.37 msec 
Message: compressing channel-002.mrc 
Message: tarring file list 
Message: compressing channel-001.mrc 
Message: compressing channel-002.mrc 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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