3v Running Log for JobId '2019.oct07.178'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=193.147.148.112 (Mon Oct 7 06:34:42 2019)
  • converting pdb into xyzr (Mon Oct 7 06:34:42 2019)
  • completed conversion of PDB file: 2019.oct07.178.pdb (size: 845k) (Mon Oct 7 06:34:52 2019)
  • converted 27055 atoms of 27055 atoms (Mon Oct 7 06:34:52 2019)
  • found 27055 atoms in pdb (Mon Oct 7 06:34:52 2019)
  • running 3v all channel program (Mon Oct 7 06:34:52 2019)
  • created 1 channel files (Mon Oct 7 06:35:00 2019)
  • Download MRC files: 1 (Mon Oct 7 06:35:00 2019)
  • imaging volume (download mrc) with UCSF Chimera (Mon Oct 7 06:35:00 2019)
  • UCSF Chimera created Jmol compatible file (Mon Oct 7 06:35:11 2019)
  • compressing channel-001.obj (Mon Oct 7 06:35:11 2019)
  • UCSF Chimera completed in 11.74 sec (Mon Oct 7 06:35:12 2019)
  • analyzing volume (Mon Oct 7 06:35:12 2019)
  • normal CoM (-35.1, -45.4, -28.9) Å (Mon Oct 7 06:35:12 2019)
  • reduced center failed (Mon Oct 7 06:35:13 2019)
  • volume analysis completed in 0.82 sec (Mon Oct 7 06:35:13 2019)
  • compressing channel-001.mrc (Mon Oct 7 06:35:13 2019)
  • compressing channel-001.mrc (Mon Oct 7 06:35:13 2019)
  • FINISHED (Mon Oct 7 06:35:13 2019)

hit reload to refresh this page



Log file display

Show last lines of log file 
Terminal display
		
Message: converted 27055 atoms of 27055 atoms 
Message: found 27055 atoms in pdb 
Message: running 3v all channel program 
Message: created 1 channel files 
Message: Download MRC files: 1 

Message: imaging volume (d ... 
himera/'>UCSF Chimera 
/var/www/html/py/appionlib/apChimSnapshot.py 
Message: UCSF Chimera created Jmol compatible file 
Message: compressing channel-001.obj 
Message: UCSF Chimera completed in 11.74 sec 
OBJFILE /var/www/html/3vee/output/2019/oct07/178/channel-001.obj.gz 
Message: analyzing volume 
Message: normal CoM (-35.1, -45.4, -28.9) Å 
Message: reduced center failed 
Message: volume analysis completed in 0.82 sec 
Message: compressing channel-001.mrc 
Message: compressing channel-001.mrc 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
Download source code
Help
Site news and updates
If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
back to main page