3v Running Log for JobId '2019.sep08.ee2'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=195.240.149.198 (Sun Sep 8 17:10:57 2019)
  • waiting for system load (3.16) to calm down, total wait time: 10.18 sec (Sun Sep 8 17:10:57 2019)
  • waiting for system load (2.74) to calm down, total wait time: 15.55 sec (Sun Sep 8 17:11:07 2019)
  • running now (Sun Sep 8 17:11:12 2019)
  • converting pdb into xyzr (Sun Sep 8 17:11:12 2019)
  • waiting for system load (2.60) to calm down, total wait time: 19.74 sec (Sun Sep 8 17:11:12 2019)
  • waiting for system load (2.72) to calm down, total wait time: 24.93 sec (Sun Sep 8 17:11:17 2019)
  • running now (Sun Sep 8 17:11:22 2019)
  • completed conversion of PDB file: 2019.sep08.ee2.pdb (size: 30k) (Sun Sep 8 17:11:23 2019)
  • converted 948 atoms of 948 atoms (Sun Sep 8 17:11:23 2019)
  • found 948 atoms in pdb (Sun Sep 8 17:11:23 2019)
  • waiting for system load (2.82) to calm down, total wait time: 31.06 sec (Sun Sep 8 17:11:23 2019)
  • waiting for system load (2.83) to calm down, total wait time: 37.29 sec (Sun Sep 8 17:11:29 2019)
  • running now (Sun Sep 8 17:11:35 2019)
  • running 3v solvent program (Sun Sep 8 17:11:35 2019)
  • waiting for system load (2.77) to calm down, total wait time: 42.93 sec (Sun Sep 8 17:11:35 2019)
  • waiting for system load (2.71) to calm down, total wait time: 48.03 sec (Sun Sep 8 17:11:41 2019)
  • running now (Sun Sep 8 17:11:46 2019)
  • imaging volume (download mrc) with UCSF Chimera (Sun Sep 8 17:11:47 2019)
  • UCSF Chimera created Jmol compatible file (Sun Sep 8 17:11:50 2019)
  • compressing 2019.sep08.ee2.obj (Sun Sep 8 17:11:50 2019)
  • waiting for system load (2.68) to calm down, total wait time: 52.87 sec (Sun Sep 8 17:11:50 2019)
  • waiting for system load (2.79) to calm down, total wait time: 58.71 sec (Sun Sep 8 17:11:55 2019)
  • running now (Sun Sep 8 17:12:01 2019)
  • waiting for system load (2.97) to calm down, total wait time: 66.46 sec (Sun Sep 8 17:12:01 2019)
  • waiting for system load (3.05) to calm down, total wait time: 1 min 15 sec (Sun Sep 8 17:12:09 2019)
  • running now (Sun Sep 8 17:12:17 2019)
  • UCSF Chimera completed in 30.13 sec (Sun Sep 8 17:12:17 2019)
  • analyzing volume (Sun Sep 8 17:12:17 2019)
  • normal CoM (-6.0, 2.0, 6.0) Å (Sun Sep 8 17:12:18 2019)
  • volume analysis completed in 0.61 sec (Sun Sep 8 17:12:18 2019)
  • compressing 2019.sep08.ee2.mrc (Sun Sep 8 17:12:18 2019)
  • waiting for system load (2.88) to calm down, total wait time: 1 min 22 sec (Sun Sep 8 17:12:18 2019)
  • waiting for system load (2.73) to calm down, total wait time: 1 min 27 sec (Sun Sep 8 17:12:25 2019)
  • running now (Sun Sep 8 17:12:30 2019)
  • waiting for system load (2.60) to calm down, total wait time: 1 min 31 sec (Sun Sep 8 17:12:30 2019)
  • waiting for system load (2.63) to calm down, total wait time: 1 min 36 sec (Sun Sep 8 17:12:34 2019)
  • running now (Sun Sep 8 17:12:39 2019)
  • FINISHED (Sun Sep 8 17:12:39 2019)

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Log file display

Show last lines of log file 
Terminal display
		
Message: waiting for system load (2.68) to calm down, total wait time: 52.87 sec 
Message: waiting for system load (2.79) to calm down, total wait time: 58.71 sec 
Message: running now 
Message: waiting for system load (2.97) to calm down, total wait time: 66.46 sec 
Message: waiting for system load (3.05) to calm down, total wait time: 1 min 15 sec 
Message: running now 
Message: UCSF Chimera completed in 30.13 sec 
OBJFILE /var/www/html/3vee/output/2019/sep08/ee2/2019.sep08.ee2.obj.gz 
Message: analyzing volume 
Message: normal CoM (-6.0, 2.0, 6.0) Å 
Message: volume analysis completed in 0.61 sec 
Message: compressing 2019.sep08.ee2.mrc 
Message: waiting for system load (2.88) to calm down, total wait time: 1 min 22 sec 
Message: waiting for system load (2.73) to calm down, total wait time: 1 min 27 sec 
Message: running now 
Message: waiting for system load (2.60) to calm down, total wait time: 1 min 31 sec 
Message: waiting for system load (2.63) to calm down, total wait time: 1 min 36 sec 
Message: running now 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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