3v Running Log for JobId '2019.sep09.a9a'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=69.124.71.174 (Mon Sep 9 16:05:56 2019)
  • converting pdb into xyzr (Mon Sep 9 16:05:56 2019)
  • completed conversion of PDB file: 2019.sep09.a9a.pdb (size: 126k) (Mon Sep 9 16:05:59 2019)
  • converted 4045 atoms of 4045 atoms (Mon Sep 9 16:05:59 2019)
  • found 4045 atoms in pdb (Mon Sep 9 16:05:59 2019)
  • running 3v all channel program (Mon Sep 9 16:05:59 2019)
  • created 2 channel files (Mon Sep 9 16:06:00 2019)
  • Download MRC files: 1 2 (Mon Sep 9 16:06:00 2019)
  • imaging volume (download mrc) with UCSF Chimera (Mon Sep 9 16:06:00 2019)
  • UCSF Chimera created Jmol compatible file (Mon Sep 9 16:06:06 2019)
  • compressing channel-001.obj (Mon Sep 9 16:06:06 2019)
  • UCSF Chimera completed in 6.15 sec (Mon Sep 9 16:06:06 2019)
  • analyzing volume (Mon Sep 9 16:06:06 2019)
  • normal CoM (-37.7, -36.3, -39.8) Å (Mon Sep 9 16:06:06 2019)
  • reduced center failed (Mon Sep 9 16:06:06 2019)
  • volume analysis completed in 17.26 msec (Mon Sep 9 16:06:06 2019)
  • compressing channel-001.mrc (Mon Sep 9 16:06:06 2019)
  • imaging volume (download mrc) with UCSF Chimera (Mon Sep 9 16:06:06 2019)
  • UCSF Chimera created Jmol compatible file (Mon Sep 9 16:06:11 2019)
  • compressing channel-002.obj (Mon Sep 9 16:06:11 2019)
  • UCSF Chimera completed in 4.79 sec (Mon Sep 9 16:06:11 2019)
  • analyzing volume (Mon Sep 9 16:06:11 2019)
  • normal CoM (-36.3, -33.5, -38.2) Å (Mon Sep 9 16:06:11 2019)
  • reduced center failed (Mon Sep 9 16:06:11 2019)
  • volume analysis completed in 34.43 msec (Mon Sep 9 16:06:11 2019)
  • compressing channel-002.mrc (Mon Sep 9 16:06:11 2019)
  • tarring file list (Mon Sep 9 16:06:11 2019)
  • compressing channel-001.mrc (Mon Sep 9 16:06:11 2019)
  • compressing channel-002.mrc (Mon Sep 9 16:06:11 2019)
  • FINISHED (Mon Sep 9 16:06:11 2019)

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Log file display

Show last lines of log file 
Terminal display
		
Message: reduced center failed 
Message: volume analysis completed in 17.26 msec 
Message: compressing channel-001.mrc 
Message: imaging volume (d ... 
himera/'>UCSF Chimera 
/var/www/html/py/appionlib/apChimSnapshot.py 
Message: UCSF Chimera created Jmol compatible file 
Message: compressing channel-002.obj 
Message: UCSF Chimera completed in 4.79 sec 
OBJFILE /var/www/html/3vee/output/2019/sep09/a9a/channel-002.obj.gz 
Message: analyzing volume 
Message: normal CoM (-36.3, -33.5, -38.2) Å 
Message: reduced center failed 
Message: volume analysis completed in 34.43 msec 
Message: compressing channel-002.mrc 
Message: tarring file list 
Message: compressing channel-001.mrc 
Message: compressing channel-002.mrc 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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