3v Running Log for JobId '2019.sep10.64f'

Program is still running, progress is shown below

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  • host ip address=130.75.149.83 (Tue Sep 10 05:58:39 2019)
  • converting pdb into xyzr (Tue Sep 10 05:58:40 2019)
  • completed conversion of PDB file: 2019.sep10.64f.pdb (size: 155k) (Tue Sep 10 05:58:41 2019)
  • converted 4965 atoms of 4965 atoms (Tue Sep 10 05:58:41 2019)
  • found 4965 atoms in pdb (Tue Sep 10 05:58:41 2019)
  • running 3v all channel program (Tue Sep 10 05:58:41 2019)
  • created 2 channel files (Tue Sep 10 05:58:57 2019)
  • Download MRC files: 1 2 (Tue Sep 10 05:58:57 2019)
  • imaging volume (download mrc) with UCSF Chimera (Tue Sep 10 05:58:57 2019)
  • UCSF Chimera created Jmol compatible file (Tue Sep 10 05:59:00 2019)
  • compressing channel-001.obj (Tue Sep 10 05:59:00 2019)
  • UCSF Chimera completed in 3.46 sec (Tue Sep 10 05:59:00 2019)
  • analyzing volume (Tue Sep 10 05:59:00 2019)
  • normal CoM (-35.3, -41.3, -36.6) Å (Tue Sep 10 05:59:00 2019)
  • reduced center failed (Tue Sep 10 05:59:00 2019)
  • volume analysis completed in 152.03 msec (Tue Sep 10 05:59:00 2019)
  • compressing channel-001.mrc (Tue Sep 10 05:59:00 2019)
  • imaging volume (download mrc) with UCSF Chimera (Tue Sep 10 05:59:00 2019)
  • UCSF Chimera created Jmol compatible file (Tue Sep 10 05:59:04 2019)
  • compressing channel-002.obj (Tue Sep 10 05:59:04 2019)
  • UCSF Chimera completed in 3.77 sec (Tue Sep 10 05:59:04 2019)
  • analyzing volume (Tue Sep 10 05:59:04 2019)
  • normal CoM (-40.3, -40.7, -32.9) Å (Tue Sep 10 05:59:04 2019)
  • reduced center failed (Tue Sep 10 05:59:04 2019)
  • volume analysis completed in 255.52 msec (Tue Sep 10 05:59:04 2019)
  • compressing channel-002.mrc (Tue Sep 10 05:59:04 2019)
  • tarring file list (Tue Sep 10 05:59:04 2019)
  • compressing channel-001.mrc (Tue Sep 10 05:59:05 2019)
  • compressing channel-002.mrc (Tue Sep 10 05:59:05 2019)
  • FINISHED (Tue Sep 10 05:59:05 2019)

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Log file display

Show last lines of log file 
Terminal display
		
Message: reduced center failed 
Message: volume analysis completed in 152.03 msec 
Message: compressing channel-001.mrc 
Message: imaging volume (d ... 
himera/'>UCSF Chimera 
/var/www/html/py/appionlib/apChimSnapshot.py 
Message: UCSF Chimera created Jmol compatible file 
Message: compressing channel-002.obj 
Message: UCSF Chimera completed in 3.77 sec 
OBJFILE /var/www/html/3vee/output/2019/sep10/64f/channel-002.obj.gz 
Message: analyzing volume 
Message: normal CoM (-40.3, -40.7, -32.9) Å 
Message: reduced center failed 
Message: volume analysis completed in 255.52 msec 
Message: compressing channel-002.mrc 
Message: tarring file list 
Message: compressing channel-001.mrc 
Message: compressing channel-002.mrc 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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