3v Results for JobId '2020.jul29.11a'

Run Information

biological unit: no
use hetero atoms: no
allow public display: no
grid resolution: high
probestep: 1.0
minprobe: 0.0
pymol: True
waterpdb: True
pdbfile: /var/www/html/3vee/output/uploads/2020.jul29.11a.pdb
maxprobe: 20.0



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Images of your surface at probe size: 0.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 49903 Å3
Surface area: 46472 Å2
Sphericity, Ψ: 0.14
Effective radius: 3.22 Å
Center of Mass: (-17.6, -3.6, 19.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.000:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 66383 Å3
Surface area: 31344 Å2
Sphericity, Ψ: 0.25
Effective radius: 6.35 Å
Center of Mass: (-17.6, -4.6, 19.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.000:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 70680 Å3
Surface area: 27367 Å2
Sphericity, Ψ: 0.30
Effective radius: 7.75 Å
Center of Mass: (-17.6, -3.6, 19.2) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.000:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 76168 Å3
Surface area: 25095 Å2
Sphericity, Ψ: 0.35
Effective radius: 9.11 Å
Center of Mass: (-17.7, -4.6, 19.3) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.000:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 84973 Å3
Surface area: 23435 Å2
Sphericity, Ψ: 0.40
Effective radius: 10.88 Å
Center of Mass: (-17.7, -3.1, 18.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.000:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 94849 Å3
Surface area: 21196 Å2
Sphericity, Ψ: 0.47
Effective radius: 13.42 Å
Center of Mass: (-17.8, -4.1, 18.5) Å

Downloadable files of your surface:




Images of your surface at probe size: 6.000:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 103594 Å3
Surface area: 19844 Å2
Sphericity, Ψ: 0.54
Effective radius: 15.66 Å
Center of Mass: (-17.7, -3.1, 18.6) Å

Downloadable files of your surface:




Images of your surface at probe size: 7.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 108480 Å3
Surface area: 19227 Å2
Sphericity, Ψ: 0.57
Effective radius: 16.93 Å
Center of Mass: (-17.7, -4.3, 18.6) Å

Downloadable files of your surface:




Images of your surface at probe size: 8.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 113842 Å3
Surface area: 18638 Å2
Sphericity, Ψ: 0.61
Effective radius: 18.32 Å
Center of Mass: (-17.7, -3.4, 18.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 9.000:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 117419 Å3
Surface area: 18369 Å2
Sphericity, Ψ: 0.63
Effective radius: 19.18 Å
Center of Mass: (-17.7, -4.4, 18.7) Å

Downloadable files of your surface:




Images of your surface at probe size: 10.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 120381 Å3
Surface area: 18160 Å2
Sphericity, Ψ: 0.65
Effective radius: 19.89 Å
Center of Mass: (-17.7, -3.5, 18.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 11.000:

           
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Volume Information

Voxel size: 0.5 Å
Volume: 123135 Å3
Surface area: 18011 Å2
Sphericity, Ψ: 0.66
Effective radius: 20.51 Å
Center of Mass: (-17.7, -4.5, 18.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 12.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 125304 Å3
Surface area: 17907 Å2
Sphericity, Ψ: 0.68
Effective radius: 20.99 Å
Center of Mass: (-17.6, -3.5, 18.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 13.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 127358 Å3
Surface area: 17844 Å2
Sphericity, Ψ: 0.69
Effective radius: 21.41 Å
Center of Mass: (-17.6, -4.5, 18.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 14.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 129506 Å3
Surface area: 17765 Å2
Sphericity, Ψ: 0.70
Effective radius: 21.87 Å
Center of Mass: (-17.6, -3.6, 18.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 15.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 131500 Å3
Surface area: 17711 Å2
Sphericity, Ψ: 0.71
Effective radius: 22.27 Å
Center of Mass: (-17.6, -4.6, 18.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 16.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 133358 Å3
Surface area: 17726 Å2
Sphericity, Ψ: 0.71
Effective radius: 22.57 Å
Center of Mass: (-17.6, -3.7, 18.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 17.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 135250 Å3
Surface area: 17688 Å2
Sphericity, Ψ: 0.72
Effective radius: 22.94 Å
Center of Mass: (-17.5, -4.7, 18.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 18.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 137067 Å3
Surface area: 17651 Å2
Sphericity, Ψ: 0.73
Effective radius: 23.30 Å
Center of Mass: (-17.5, -3.7, 18.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 19.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 138670 Å3
Surface area: 17657 Å2
Sphericity, Ψ: 0.73
Effective radius: 23.56 Å
Center of Mass: (-17.5, -4.7, 18.8) Å

Downloadable files of your surface:




Images of your surface at probe size: 20.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 140036 Å3
Surface area: 17660 Å2
Sphericity, Ψ: 0.74
Effective radius: 23.79 Å
Center of Mass: (-17.5, -3.7, 18.8) Å

Downloadable files of your surface:



Downloadable files of your surface:

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Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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