3v Running Log for JobId '2020.jul29.c93'

Program is still running, progress is shown below

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  • host ip address=179.108.249.206 (Wed Jul 29 13:30:06 2020)
  • converting pdb into xyzr (Wed Jul 29 13:30:06 2020)
  • completed conversion of PDB file: 2020.jul29.c93.pdb (size: 635k) (Wed Jul 29 13:30:18 2020)
  • converted 20324 atoms of 20324 atoms (Wed Jul 29 13:30:18 2020)
  • found 20324 atoms in pdb (Wed Jul 29 13:30:18 2020)
  • running 3v all channel program (Wed Jul 29 13:30:18 2020)
  • created 2 channel files (Wed Jul 29 13:30:24 2020)
  • Download MRC files: 1 2 (Wed Jul 29 13:30:24 2020)
  • imaging volume (download mrc) with UCSF Chimera (Wed Jul 29 13:30:24 2020)
  • UCSF Chimera created Jmol compatible file (Wed Jul 29 13:30:36 2020)
  • compressing channel-001.obj (Wed Jul 29 13:30:36 2020)
  • UCSF Chimera completed in 12.02 sec (Wed Jul 29 13:30:36 2020)
  • analyzing volume (Wed Jul 29 13:30:36 2020)
  • normal CoM (-50.3, -57.1, -50.2) Å (Wed Jul 29 13:30:36 2020)
  • reduced center failed (Wed Jul 29 13:30:36 2020)
  • volume analysis completed in 187.98 msec (Wed Jul 29 13:30:36 2020)
  • compressing channel-001.mrc (Wed Jul 29 13:30:36 2020)
  • imaging volume (download mrc) with UCSF Chimera (Wed Jul 29 13:30:36 2020)
  • UCSF Chimera created Jmol compatible file (Wed Jul 29 13:30:48 2020)
  • compressing channel-002.obj (Wed Jul 29 13:30:48 2020)
  • UCSF Chimera completed in 12.23 sec (Wed Jul 29 13:30:49 2020)
  • analyzing volume (Wed Jul 29 13:30:49 2020)
  • normal CoM (-44.5, -24.7, -40.2) Å (Wed Jul 29 13:30:50 2020)
  • reduced center failed (Wed Jul 29 13:30:50 2020)
  • volume analysis completed in 1.36 sec (Wed Jul 29 13:30:50 2020)
  • compressing channel-002.mrc (Wed Jul 29 13:30:50 2020)
  • tarring file list (Wed Jul 29 13:30:50 2020)
  • compressing channel-001.mrc (Wed Jul 29 13:30:50 2020)
  • compressing channel-002.mrc (Wed Jul 29 13:30:50 2020)
  • FINISHED (Wed Jul 29 13:30:50 2020)

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Log file display

Show last lines of log file 
Terminal display
		
Message: reduced center failed 
Message: volume analysis completed in 187.98 msec 
Message: compressing channel-001.mrc 
Message: imaging volume (d ... 
himera/'>UCSF Chimera 
/var/www/html/py/appionlib/apChimSnapshot.py 
Message: UCSF Chimera created Jmol compatible file 
Message: compressing channel-002.obj 
Message: UCSF Chimera completed in 12.23 sec 
OBJFILE /var/www/html/3vee/output/2020/jul29/c93/channel-002.obj.gz 
Message: analyzing volume 
Message: normal CoM (-44.5, -24.7, -40.2) Å 
Message: reduced center failed 
Message: volume analysis completed in 1.36 sec 
Message: compressing channel-002.mrc 
Message: tarring file list 
Message: compressing channel-001.mrc 
Message: compressing channel-002.mrc 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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