3v Running Log for JobId '2020.may21.be4'

Program is still running, progress is shown below

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  • host ip address=50.209.85.210 (Thu May 21 21:55:18 2020)
  • converting pdb into xyzr (Thu May 21 21:55:18 2020)
  • completed conversion of PDB file: 2020.may21.be4.pdb (size: 188k) (Thu May 21 21:55:20 2020)
  • converted 6016 atoms of 6016 atoms (Thu May 21 21:55:20 2020)
  • found 6016 atoms in pdb (Thu May 21 21:55:20 2020)
  • running 3v all channel program (Thu May 21 21:55:20 2020)
  • created 2 channel files (Thu May 21 21:55:22 2020)
  • Download MRC files: 1 2 (Thu May 21 21:55:22 2020)
  • imaging volume (download mrc) with UCSF Chimera (Thu May 21 21:55:22 2020)
  • UCSF Chimera created Jmol compatible file (Thu May 21 21:55:28 2020)
  • compressing channel-001.obj (Thu May 21 21:55:28 2020)
  • UCSF Chimera completed in 6.08 sec (Thu May 21 21:55:28 2020)
  • analyzing volume (Thu May 21 21:55:28 2020)
  • normal CoM (-34.5, -43.7, -50.5) Å (Thu May 21 21:55:28 2020)
  • reduced center failed (Thu May 21 21:55:28 2020)
  • volume analysis completed in 11.74 msec (Thu May 21 21:55:28 2020)
  • compressing channel-001.mrc (Thu May 21 21:55:28 2020)
  • imaging volume (download mrc) with UCSF Chimera (Thu May 21 21:55:28 2020)
  • UCSF Chimera created Jmol compatible file (Thu May 21 21:55:34 2020)
  • compressing channel-002.obj (Thu May 21 21:55:34 2020)
  • UCSF Chimera completed in 5.69 sec (Thu May 21 21:55:34 2020)
  • analyzing volume (Thu May 21 21:55:34 2020)
  • normal CoM (-35.5, -41.6, -50.4) Å (Thu May 21 21:55:34 2020)
  • reduced center failed (Thu May 21 21:55:34 2020)
  • volume analysis completed in 11.09 msec (Thu May 21 21:55:34 2020)
  • compressing channel-002.mrc (Thu May 21 21:55:34 2020)
  • tarring file list (Thu May 21 21:55:34 2020)
  • compressing channel-001.mrc (Thu May 21 21:55:34 2020)
  • compressing channel-002.mrc (Thu May 21 21:55:34 2020)
  • FINISHED (Thu May 21 21:55:34 2020)

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Log file display

Show last lines of log file 
Terminal display
		
Message: reduced center failed 
Message: volume analysis completed in 11.74 msec 
Message: compressing channel-001.mrc 
Message: imaging volume (d ... 
himera/'>UCSF Chimera 
/var/www/html/py/appionlib/apChimSnapshot.py 
Message: UCSF Chimera created Jmol compatible file 
Message: compressing channel-002.obj 
Message: UCSF Chimera completed in 5.69 sec 
OBJFILE /var/www/html/3vee/output/2020/may21/be4/channel-002.obj.gz 
Message: analyzing volume 
Message: normal CoM (-35.5, -41.6, -50.4) Å 
Message: reduced center failed 
Message: volume analysis completed in 11.09 msec 
Message: compressing channel-002.mrc 
Message: tarring file list 
Message: compressing channel-001.mrc 
Message: compressing channel-002.mrc 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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