3v Running Log for JobId '2020.nov19.00b'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=65.96.167.130 (Thu Nov 19 23:29:52 2020)
  • waiting for system load (11.94) to calm down, total wait time: 21 min 49 sec (Thu Nov 19 23:29:53 2020)
  • waiting for system load (13.53) to calm down, total wait time: 54 min 37 sec (Thu Nov 19 23:51:42 2020)
  • waiting for system load (11.41) to calm down, total wait time: 1 hr 13 min (Fri Nov 20 00:24:30 2020)
  • waiting for system load (12.75) to calm down, total wait time: 1 hr 40 min (Fri Nov 20 00:43:18 2020)
  • waiting for system load (13.63) to calm down, total wait time: 2 hr 14 min (Fri Nov 20 01:10:20 2020)
  • waiting for system load (12.63) to calm down, total wait time: 2 hr 40 min (Fri Nov 20 01:43:55 2020)
  • waiting for system load (11.68) to calm down, total wait time: 3 hr 1 min (Fri Nov 20 02:10:09 2020)
  • waiting for system load (12.04) to calm down, total wait time: 3 hr 23 min (Fri Nov 20 02:30:27 2020)
  • waiting for system load (10.47) to calm down, total wait time: 3 hr 37 min (Fri Nov 20 02:52:53 2020)
  • waiting for system load (10.27) to calm down, total wait time: 3 hr 50 min (Fri Nov 20 03:07:02 2020)
  • waiting for system load (11.44) to calm down, total wait time: 4 hr 9 min (Fri Nov 20 03:20:19 2020)
  • waiting for system load (13.01) to calm down, total wait time: 4 hr 38 min (Fri Nov 20 03:39:17 2020)
  • waiting for system load (12.19) to calm down, total wait time: 5 hr 2 min (Fri Nov 20 04:08:10 2020)
  • waiting for system load (12.45) to calm down, total wait time: 5 hr 27 min (Fri Nov 20 04:31:31 2020)
  • waiting for system load (13.57) to calm down, total wait time: 5 hr 60 min (Fri Nov 20 04:56:32 2020)
  • waiting for system load (11.62) to calm down, total wait time: 6 hr 20 min (Fri Nov 20 05:29:39 2020)
  • waiting for system load (12.39) to calm down, total wait time: 6 hr 44 min (Fri Nov 20 05:49:37 2020)
  • running now (Fri Nov 20 06:14:14 2020)
  • converting pdb into xyzr (Fri Nov 20 06:14:14 2020)
  • waiting for system load (10.38) to calm down, total wait time: 6 hr 58 min (Fri Nov 20 06:14:15 2020)
  • waiting for system load (12.27) to calm down, total wait time: 7 hr 22 min (Fri Nov 20 06:28:00 2020)
  • waiting for system load (9.69) to calm down, total wait time: 7 hr 33 min (Fri Nov 20 06:51:52 2020)
  • waiting for system load (10.89) to calm down, total wait time: 7 hr 49 min (Fri Nov 20 07:02:48 2020)
  • waiting for system load (7.60) to calm down, total wait time: 7 hr 54 min (Fri Nov 20 07:18:56 2020)
  • waiting for system load (8.64) to calm down, total wait time: 8 hr 1 min (Fri Nov 20 07:23:43 2020)
  • waiting for system load (8.93) to calm down, total wait time: 8 hr 10 min (Fri Nov 20 07:31:10 2020)
  • waiting for system load (8.15) to calm down, total wait time: 8 hr 16 min (Fri Nov 20 07:39:28 2020)
  • waiting for system load (7.25) to calm down, total wait time: 8 hr 20 min (Fri Nov 20 07:45:34 2020)
  • waiting for system load (11.84) to calm down, total wait time: 8 hr 41 min (Fri Nov 20 07:49:38 2020)
  • waiting for system load (8.63) to calm down, total wait time: 8 hr 48 min (Fri Nov 20 08:10:52 2020)
  • waiting for system load (9.17) to calm down, total wait time: 8 hr 57 min (Fri Nov 20 08:18:17 2020)
  • waiting for system load (9.11) to calm down, total wait time: 9 hr 6 min (Fri Nov 20 08:27:22 2020)
  • waiting for system load (9.30) to calm down, total wait time: 9 hr 16 min (Fri Nov 20 08:36:16 2020)
  • running now (Fri Nov 20 08:45:48 2020)
  • completed conversion of PDB file: 2020.nov19.00b.pdb (size: 412k) (Fri Nov 20 08:45:57 2020)
  • converted 13176 atoms of 13176 atoms (Fri Nov 20 08:45:57 2020)
  • found 13176 atoms in pdb (Fri Nov 20 08:45:57 2020)
  • waiting for system load (7.44) to calm down, total wait time: 9 hr 20 min (Fri Nov 20 08:45:57 2020)
  • waiting for system load (8.57) to calm down, total wait time: 9 hr 28 min (Fri Nov 20 08:50:24 2020)
  • waiting for system load (8.13) to calm down, total wait time: 9 hr 34 min (Fri Nov 20 08:57:38 2020)
  • waiting for system load (7.74) to calm down, total wait time: 9 hr 39 min (Fri Nov 20 09:03:41 2020)
  • waiting for system load (5.60) to calm down, total wait time: 9 hr 40 min (Fri Nov 20 09:08:47 2020)
  • running now (Fri Nov 20 09:10:25 2020)
  • running 3v solvent program (Fri Nov 20 09:10:25 2020)
  • waiting for system load (3.91) to calm down, total wait time: 9 hr 41 min (Fri Nov 20 09:10:25 2020)
  • waiting for system load (4.41) to calm down, total wait time: 9 hr 41 min (Fri Nov 20 09:10:50 2020)
  • waiting for system load (4.89) to calm down, total wait time: 9 hr 42 min (Fri Nov 20 09:11:29 2020)
  • waiting for system load (5.83) to calm down, total wait time: 9 hr 44 min (Fri Nov 20 09:12:28 2020)
  • running now (Fri Nov 20 09:14:21 2020)
  • imaging volume (download mrc) with UCSF Chimera (Fri Nov 20 09:21:11 2020)
  • UCSF Chimera created Jmol compatible file (Fri Nov 20 09:21:30 2020)
  • compressing 2020.nov19.00b.obj (Fri Nov 20 09:21:30 2020)
  • waiting for system load (11.57) to calm down, total wait time: 10 hr 4 min (Fri Nov 20 09:21:30 2020)
  • waiting for system load (4.47) to calm down, total wait time: 10 hr 5 min (Fri Nov 20 09:41:11 2020)
  • waiting for system load (3.60) to calm down, total wait time: 10 hr 5 min (Fri Nov 20 09:41:53 2020)
  • running now (Fri Nov 20 09:42:11 2020)
  • waiting for system load (3.08) to calm down, total wait time: 10 hr 5 min (Fri Nov 20 09:42:11 2020)
  • waiting for system load (2.99) to calm down, total wait time: 10 hr 5 min (Fri Nov 20 09:42:20 2020)
  • running now (Fri Nov 20 09:42:28 2020)
  • UCSF Chimera completed in 21 min 17 sec (Fri Nov 20 09:42:28 2020)
  • analyzing volume (Fri Nov 20 09:42:28 2020)
  • normal CoM (-23.6, -14.1, -5.6) Å (Fri Nov 20 09:42:33 2020)
  • reduced center failed (Fri Nov 20 09:42:34 2020)
  • volume analysis completed in 5.62 sec (Fri Nov 20 09:42:34 2020)
  • compressing 2020.nov19.00b.mrc (Fri Nov 20 09:42:34 2020)
  • waiting for system load (3.16) to calm down, total wait time: 10 hr 5 min (Fri Nov 20 09:42:34 2020)
  • waiting for system load (3.14) to calm down, total wait time: 10 hr 6 min (Fri Nov 20 09:42:44 2020)
  • waiting for system load (3.81) to calm down, total wait time: 10 hr 6 min (Fri Nov 20 09:42:54 2020)
  • waiting for system load (4.99) to calm down, total wait time: 10 hr 7 min (Fri Nov 20 09:43:16 2020)
  • waiting for system load (7.44) to calm down, total wait time: 10 hr 11 min (Fri Nov 20 09:44:20 2020)
  • waiting for system load (7.77) to calm down, total wait time: 10 hr 17 min (Fri Nov 20 09:48:47 2020)
  • waiting for system load (7.11) to calm down, total wait time: 10 hr 20 min (Fri Nov 20 09:53:57 2020)
  • running now (Fri Nov 20 09:57:46 2020)
  • waiting for system load (5.36) to calm down, total wait time: 10 hr 22 min (Fri Nov 20 09:57:46 2020)
  • waiting for system load (8.71) to calm down, total wait time: 10 hr 29 min (Fri Nov 20 09:59:09 2020)
  • waiting for system load (9.18) to calm down, total wait time: 10 hr 39 min (Fri Nov 20 10:06:47 2020)
  • waiting for system load (5.71) to calm down, total wait time: 10 hr 40 min (Fri Nov 20 10:15:55 2020)
  • waiting for system load (5.59) to calm down, total wait time: 10 hr 42 min (Fri Nov 20 10:17:40 2020)
  • waiting for system load (6.16) to calm down, total wait time: 10 hr 44 min (Fri Nov 20 10:19:16 2020)
  • running now (Fri Nov 20 10:21:34 2020)
  • FINISHED (Fri Nov 20 10:21:34 2020)

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Log file display

Show last lines of log file 
Terminal display
		
Message: reduced center failed 
Message: volume analysis completed in 5.62 sec 
Message: compressing 2020.nov19.00b.mrc 
Message: waiting for system load (3.16) to calm down, total wait time: 10 hr 5 min 
Message: waiting for system load (3.14) to calm down, total wait time: 10 hr 6 min 
Message: waiting for system load (3.81) to calm down, total wait time: 10 hr 6 min 
Message: waiting for system load (4.99) to calm down, total wait time: 10 hr 7 min 
Message: waiting for system load (7.44) to calm down, total wait time: 10 hr 11 min 
Message: waiting for system load (7.77) to calm down, total wait time: 10 hr 17 min 
Message: waiting for system load (7.11) to calm down, total wait time: 10 hr 20 min 
Message: running now 
Message: waiting for system load (5.36) to calm down, total wait time: 10 hr 22 min 
Message: waiting for system load (8.71) to calm down, total wait time: 10 hr 29 min 
Message: waiting for system load (9.18) to calm down, total wait time: 10 hr 39 min 
Message: waiting for system load (5.71) to calm down, total wait time: 10 hr 40 min 
Message: waiting for system load (5.59) to calm down, total wait time: 10 hr 42 min 
Message: waiting for system load (6.16) to calm down, total wait time: 10 hr 44 min 
Message: running now 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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