3v Running Log for JobId '2020.nov19.53e'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=216.165.95.170 (Thu Nov 19 13:55:31 2020)
  • waiting for system load (10.87) to calm down, total wait time: 16 min 2 sec (Thu Nov 19 13:55:32 2020)
  • waiting for system load (11.42) to calm down, total wait time: 34 min 53 sec (Thu Nov 19 14:11:33 2020)
  • waiting for system load (11.54) to calm down, total wait time: 54 min 24 sec (Thu Nov 19 14:30:25 2020)
  • waiting for system load (10.33) to calm down, total wait time: 67 min 56 sec (Thu Nov 19 14:49:56 2020)
  • waiting for system load (10.28) to calm down, total wait time: 1 hr 21 min (Thu Nov 19 15:03:28 2020)
  • waiting for system load (9.16) to calm down, total wait time: 1 hr 30 min (Thu Nov 19 15:16:48 2020)
  • waiting for system load (9.19) to calm down, total wait time: 1 hr 39 min (Thu Nov 19 15:25:51 2020)
  • waiting for system load (9.73) to calm down, total wait time: 1 hr 51 min (Thu Nov 19 15:35:01 2020)
  • waiting for system load (7.71) to calm down, total wait time: 1 hr 56 min (Thu Nov 19 15:46:06 2020)
  • waiting for system load (9.94) to calm down, total wait time: 2 hr 8 min (Thu Nov 19 15:51:09 2020)
  • waiting for system load (9.14) to calm down, total wait time: 2 hr 17 min (Thu Nov 19 16:03:03 2020)
  • waiting for system load (9.77) to calm down, total wait time: 2 hr 28 min (Thu Nov 19 16:12:03 2020)
  • waiting for system load (11.45) to calm down, total wait time: 2 hr 47 min (Thu Nov 19 16:23:18 2020)
  • waiting for system load (10.94) to calm down, total wait time: 3 hr 3 min (Thu Nov 19 16:42:19 2020)
  • waiting for system load (9.96) to calm down, total wait time: 3 hr 15 min (Thu Nov 19 16:58:41 2020)
  • running now (Thu Nov 19 17:10:41 2020)
  • converting pdb into xyzr (Thu Nov 19 17:10:41 2020)
  • waiting for system load (7.88) to calm down, total wait time: 3 hr 21 min (Thu Nov 19 17:10:41 2020)
  • waiting for system load (9.61) to calm down, total wait time: 3 hr 31 min (Thu Nov 19 17:16:07 2020)
  • waiting for system load (10.01) to calm down, total wait time: 3 hr 43 min (Thu Nov 19 17:26:45 2020)
  • waiting for system load (9.51) to calm down, total wait time: 3 hr 54 min (Thu Nov 19 17:38:57 2020)
  • waiting for system load (9.75) to calm down, total wait time: 4 hr 5 min (Thu Nov 19 17:49:13 2020)
  • waiting for system load (9.18) to calm down, total wait time: 4 hr 14 min (Thu Nov 19 18:00:24 2020)
  • waiting for system load (11.99) to calm down, total wait time: 4 hr 36 min (Thu Nov 19 18:09:31 2020)
  • waiting for system load (11.39) to calm down, total wait time: 4 hr 55 min (Thu Nov 19 18:31:39 2020)
  • waiting for system load (11.61) to calm down, total wait time: 5 hr 15 min (Thu Nov 19 18:50:20 2020)
  • waiting for system load (13.61) to calm down, total wait time: 5 hr 48 min (Thu Nov 19 19:10:15 2020)
  • waiting for system load (11.22) to calm down, total wait time: 6 hr 6 min (Thu Nov 19 19:43:40 2020)
  • waiting for system load (11.08) to calm down, total wait time: 6 hr 23 min (Thu Nov 19 20:01:28 2020)
  • waiting for system load (12.47) to calm down, total wait time: 6 hr 48 min (Thu Nov 19 20:18:32 2020)
  • waiting for system load (13.50) to calm down, total wait time: 7 hr 21 min (Thu Nov 19 20:43:42 2020)
  • waiting for system load (13.33) to calm down, total wait time: 7 hr 52 min (Thu Nov 19 21:16:15 2020)
  • waiting for system load (12.54) to calm down, total wait time: 8 hr 18 min (Thu Nov 19 21:47:30 2020)
  • waiting for system load (13.56) to calm down, total wait time: 8 hr 51 min (Thu Nov 19 22:13:07 2020)
  • waiting for system load (14.18) to calm down, total wait time: 9 hr 29 min (Thu Nov 19 22:46:08 2020)
  • waiting for system load (12.37) to calm down, total wait time: 9 hr 53 min (Thu Nov 19 23:24:18 2020)
  • waiting for system load (12.71) to calm down, total wait time: 10 hr 20 min (Thu Nov 19 23:48:48 2020)
  • waiting for system load (14.87) to calm down, total wait time: 11 hr 4 min (Fri Nov 20 00:15:34 2020)
  • running now (Fri Nov 20 01:00:03 2020)
  • completed conversion of PDB file: 2020.nov19.53e.pdb (size: 27k) (Fri Nov 20 01:00:06 2020)
  • converted 855 atoms of 855 atoms (Fri Nov 20 01:00:06 2020)
  • found 855 atoms in pdb (Fri Nov 20 01:00:06 2020)
  • waiting for system load (11.87) to calm down, total wait time: 11 hr 26 min (Fri Nov 20 01:00:06 2020)
  • waiting for system load (14.07) to calm down, total wait time: 12 hr 3 min (Fri Nov 20 01:21:31 2020)
  • waiting for system load (12.74) to calm down, total wait time: 12 hr 30 min (Fri Nov 20 01:58:44 2020)
  • waiting for system load (12.04) to calm down, total wait time: 12 hr 52 min (Fri Nov 20 02:25:42 2020)
  • waiting for system load (13.05) to calm down, total wait time: 13 hr 22 min (Fri Nov 20 02:48:08 2020)
  • waiting for system load (11.74) to calm down, total wait time: 13 hr 42 min (Fri Nov 20 03:17:18 2020)
  • waiting for system load (13.54) to calm down, total wait time: 14 hr 15 min (Fri Nov 20 03:37:57 2020)
  • waiting for system load (10.33) to calm down, total wait time: 14 hr 29 min (Fri Nov 20 04:10:49 2020)
  • waiting for system load (11.39) to calm down, total wait time: 14 hr 47 min (Fri Nov 20 04:24:21 2020)
  • waiting for system load (13.07) to calm down, total wait time: 15 hr 17 min (Fri Nov 20 04:43:03 2020)
  • waiting for system load (12.37) to calm down, total wait time: 15 hr 41 min (Fri Nov 20 05:12:22 2020)
  • waiting for system load (13.14) to calm down, total wait time: 16 hr 11 min (Fri Nov 20 05:36:52 2020)
  • waiting for system load (13.57) to calm down, total wait time: 16 hr 44 min (Fri Nov 20 06:06:41 2020)
  • waiting for system load (12.88) to calm down, total wait time: 17 hr 12 min (Fri Nov 20 06:39:47 2020)
  • running now (Fri Nov 20 07:07:44 2020)
  • running 3v volume program (Fri Nov 20 07:07:44 2020)
  • waiting for system load (8.20) to calm down, total wait time: 17 hr 18 min (Fri Nov 20 07:07:44 2020)
  • waiting for system load (9.57) to calm down, total wait time: 17 hr 29 min (Fri Nov 20 07:13:58 2020)
  • waiting for system load (9.12) to calm down, total wait time: 17 hr 38 min (Fri Nov 20 07:24:27 2020)
  • waiting for system load (8.55) to calm down, total wait time: 17 hr 45 min (Fri Nov 20 07:33:23 2020)
  • waiting for system load (9.78) to calm down, total wait time: 17 hr 56 min (Fri Nov 20 07:40:34 2020)
  • waiting for system load (9.61) to calm down, total wait time: 18 hr 7 min (Fri Nov 20 07:51:51 2020)
  • waiting for system load (11.03) to calm down, total wait time: 18 hr 24 min (Fri Nov 20 08:02:29 2020)
  • waiting for system load (8.85) to calm down, total wait time: 18 hr 32 min (Fri Nov 20 08:19:18 2020)
  • waiting for system load (9.11) to calm down, total wait time: 18 hr 41 min (Fri Nov 20 08:27:22 2020)
  • waiting for system load (9.30) to calm down, total wait time: 18 hr 50 min (Fri Nov 20 08:36:16 2020)
  • waiting for system load (7.53) to calm down, total wait time: 18 hr 55 min (Fri Nov 20 08:45:48 2020)
  • waiting for system load (8.52) to calm down, total wait time: 19 hr 2 min (Fri Nov 20 08:50:26 2020)
  • waiting for system load (8.23) to calm down, total wait time: 19 hr 8 min (Fri Nov 20 08:57:32 2020)
  • running now (Fri Nov 20 09:03:50 2020)
  • waiting for system load (8.82) to calm down, total wait time: 19 hr 16 min (Fri Nov 20 09:04:12 2020)
  • waiting for system load (5.50) to calm down, total wait time: 19 hr 18 min (Fri Nov 20 09:12:10 2020)
  • waiting for system load (4.58) to calm down, total wait time: 19 hr 18 min (Fri Nov 20 09:13:42 2020)
  • waiting for system load (4.35) to calm down, total wait time: 19 hr 19 min (Fri Nov 20 09:14:28 2020)
  • waiting for system load (7.79) to calm down, total wait time: 19 hr 24 min (Fri Nov 20 09:15:05 2020)
  • waiting for system load (12.73) to calm down, total wait time: 19 hr 51 min (Fri Nov 20 09:20:19 2020)
  • waiting for system load (8.82) to calm down, total wait time: 19 hr 59 min (Fri Nov 20 09:47:13 2020)
  • waiting for system load (6.30) to calm down, total wait time: 20 hr 2 min (Fri Nov 20 09:55:11 2020)
  • running now (Fri Nov 20 09:57:40 2020)
  • smoothing out volume (Fri Nov 20 09:57:40 2020)
  • waiting for system load (4.96) to calm down, total wait time: 20 hr 3 min (Fri Nov 20 09:57:40 2020)
  • waiting for system load (8.15) to calm down, total wait time: 20 hr 9 min (Fri Nov 20 09:58:43 2020)
  • waiting for system load (9.79) to calm down, total wait time: 20 hr 20 min (Fri Nov 20 10:04:48 2020)
  • waiting for system load (5.62) to calm down, total wait time: 20 hr 22 min (Fri Nov 20 10:16:08 2020)
  • waiting for system load (5.65) to calm down, total wait time: 20 hr 23 min (Fri Nov 20 10:17:46 2020)
  • waiting for system load (6.21) to calm down, total wait time: 20 hr 26 min (Fri Nov 20 10:19:27 2020)
  • running now (Fri Nov 20 10:21:49 2020)
  • imaging volume (download mrc) with UCSF Chimera (Fri Nov 20 10:21:49 2020)
  • UCSF Chimera created Jmol compatible file (Fri Nov 20 10:21:55 2020)
  • compressing 2020.nov19.53e.obj (Fri Nov 20 10:21:55 2020)
  • waiting for system load (4.71) to calm down, total wait time: 20 hr 27 min (Fri Nov 20 10:21:55 2020)
  • waiting for system load (5.22) to calm down, total wait time: 20 hr 28 min (Fri Nov 20 10:22:46 2020)
  • waiting for system load (5.93) to calm down, total wait time: 20 hr 30 min (Fri Nov 20 10:24:02 2020)
  • waiting for system load (5.91) to calm down, total wait time: 20 hr 32 min (Fri Nov 20 10:26:02 2020)
  • waiting for system load (5.48) to calm down, total wait time: 20 hr 33 min (Fri Nov 20 10:28:00 2020)
  • waiting for system load (6.48) to calm down, total wait time: 20 hr 36 min (Fri Nov 20 10:29:31 2020)
  • waiting for system load (7.13) to calm down, total wait time: 20 hr 40 min (Fri Nov 20 10:32:15 2020)
  • waiting for system load (7.05) to calm down, total wait time: 20 hr 44 min (Fri Nov 20 10:36:06 2020)
  • waiting for system load (6.41) to calm down, total wait time: 20 hr 46 min (Fri Nov 20 10:39:48 2020)
  • running now (Fri Nov 20 10:42:26 2020)
  • waiting for system load (5.78) to calm down, total wait time: 20 hr 48 min (Fri Nov 20 10:42:26 2020)
  • waiting for system load (7.35) to calm down, total wait time: 20 hr 52 min (Fri Nov 20 10:44:16 2020)
  • waiting for system load (5.56) to calm down, total wait time: 20 hr 54 min (Fri Nov 20 10:48:32 2020)
  • waiting for system load (6.55) to calm down, total wait time: 20 hr 57 min (Fri Nov 20 10:50:07 2020)
  • waiting for system load (5.66) to calm down, total wait time: 20 hr 58 min (Fri Nov 20 10:52:58 2020)
  • waiting for system load (4.80) to calm down, total wait time: 20 hr 59 min (Fri Nov 20 10:54:39 2020)
  • waiting for system load (5.02) to calm down, total wait time: 21 hr 0 min (Fri Nov 20 10:55:34 2020)
  • waiting for system load (6.38) to calm down, total wait time: 21 hr 3 min (Fri Nov 20 10:56:40 2020)
  • running now (Fri Nov 20 10:59:16 2020)
  • UCSF Chimera completed in 1 hr 55 min (Fri Nov 20 10:59:17 2020)
  • analyzing volume (Fri Nov 20 10:59:17 2020)
  • normal CoM (-2.7, 0.4, -7.1) Å (Fri Nov 20 10:59:20 2020)
  • reduced center failed (Fri Nov 20 10:59:21 2020)
  • volume analysis completed in 3.16 sec (Fri Nov 20 10:59:21 2020)
  • compressing 2020.nov19.53e.mrc (Fri Nov 20 10:59:21 2020)
  • waiting for system load (5.53) to calm down, total wait time: 21 hr 5 min (Fri Nov 20 10:59:21 2020)
  • waiting for system load (4.50) to calm down, total wait time: 21 hr 5 min (Fri Nov 20 11:00:54 2020)
  • waiting for system load (5.15) to calm down, total wait time: 21 hr 7 min (Fri Nov 20 11:01:37 2020)
  • waiting for system load (5.75) to calm down, total wait time: 21 hr 8 min (Fri Nov 20 11:02:48 2020)
  • waiting for system load (6.44) to calm down, total wait time: 21 hr 11 min (Fri Nov 20 11:04:36 2020)
  • waiting for system load (7.21) to calm down, total wait time: 21 hr 15 min (Fri Nov 20 11:07:17 2020)
  • waiting for system load (9.78) to calm down, total wait time: 21 hr 26 min (Fri Nov 20 11:11:17 2020)
  • waiting for system load (7.16) to calm down, total wait time: 21 hr 30 min (Fri Nov 20 11:22:34 2020)
  • waiting for system load (7.97) to calm down, total wait time: 21 hr 36 min (Fri Nov 20 11:26:28 2020)
  • waiting for system load (6.91) to calm down, total wait time: 21 hr 39 min (Fri Nov 20 11:32:07 2020)
  • waiting for system load (8.62) to calm down, total wait time: 21 hr 47 min (Fri Nov 20 11:35:33 2020)
  • running now (Fri Nov 20 11:42:56 2020)
  • waiting for system load (7.44) to calm down, total wait time: 21 hr 51 min (Fri Nov 20 11:42:56 2020)
  • waiting for system load (8.79) to calm down, total wait time: 21 hr 59 min (Fri Nov 20 11:47:23 2020)
  • waiting for system load (8.82) to calm down, total wait time: 22 hr 7 min (Fri Nov 20 11:55:16 2020)
  • waiting for system load (7.18) to calm down, total wait time: 22 hr 11 min (Fri Nov 20 12:03:14 2020)
  • waiting for system load (8.66) to calm down, total wait time: 22 hr 18 min (Fri Nov 20 12:07:11 2020)
  • waiting for system load (11.03) to calm down, total wait time: 22 hr 35 min (Fri Nov 20 12:14:40 2020)
  • waiting for system load (6.84) to calm down, total wait time: 22 hr 38 min (Fri Nov 20 12:31:30 2020)
  • waiting for system load (6.31) to calm down, total wait time: 22 hr 41 min (Fri Nov 20 12:34:49 2020)
  • waiting for system load (8.62) to calm down, total wait time: 22 hr 48 min (Fri Nov 20 12:37:19 2020)
  • waiting for system load (7.22) to calm down, total wait time: 22 hr 52 min (Fri Nov 20 12:44:42 2020)
  • waiting for system load (7.48) to calm down, total wait time: 22 hr 57 min (Fri Nov 20 12:48:42 2020)
  • waiting for system load (7.95) to calm down, total wait time: 23 hr 3 min (Fri Nov 20 12:53:15 2020)
  • waiting for system load (8.17) to calm down, total wait time: 23 hr 9 min (Fri Nov 20 12:58:51 2020)
  • waiting for system load (9.55) to calm down, total wait time: 23 hr 19 min (Fri Nov 20 13:04:59 2020)
  • waiting for system load (10.23) to calm down, total wait time: 23 hr 32 min (Fri Nov 20 13:15:25 2020)
  • waiting for system load (9.91) to calm down, total wait time: 23 hr 44 min (Fri Nov 20 13:28:31 2020)
  • running now (Fri Nov 20 13:40:19 2020)
  • FINISHED (Fri Nov 20 13:40:19 2020)

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Log file display

Show last lines of log file 
Terminal display
		
Message: waiting for system load (8.62) to calm down, total wait time: 21 hr 47 min 
Message: running now 
Message: waiting for system load (7.44) to calm down, total wait time: 21 hr 51 min 
Message: waiting for system load (8.79) to calm down, total wait time: 21 hr 59 min 
Message: waiting for system load (8.82) to calm down, total wait time: 22 hr 7 min 
Message: waiting for system load (7.18) to calm down, total wait time: 22 hr 11 min 
Message: waiting for system load (8.66) to calm down, total wait time: 22 hr 18 min 
Message: waiting for system load (11.03) to calm down, total wait time: 22 hr 35 min 
Message: waiting for system load (6.84) to calm down, total wait time: 22 hr 38 min 
Message: waiting for system load (6.31) to calm down, total wait time: 22 hr 41 min 
Message: waiting for system load (8.62) to calm down, total wait time: 22 hr 48 min 
Message: waiting for system load (7.22) to calm down, total wait time: 22 hr 52 min 
Message: waiting for system load (7.48) to calm down, total wait time: 22 hr 57 min 
Message: waiting for system load (7.95) to calm down, total wait time: 23 hr 3 min 
Message: waiting for system load (8.17) to calm down, total wait time: 23 hr 9 min 
Message: waiting for system load (9.55) to calm down, total wait time: 23 hr 19 min 
Message: waiting for system load (10.23) to calm down, total wait time: 23 hr 32 min 
Message: waiting for system load (9.91) to calm down, total wait time: 23 hr 44 min 
Message: running now 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
Download source code
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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