3v Running Log for JobId '2020.nov19.933'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=131.111.112.119 (Thu Nov 19 12:07:42 2020)
  • waiting for system load (13.02) to calm down, total wait time: 28 min 57 sec (Thu Nov 19 12:07:42 2020)
  • waiting for system load (10.40) to calm down, total wait time: 42 min 47 sec (Thu Nov 19 12:36:39 2020)
  • waiting for system load (9.18) to calm down, total wait time: 51 min 55 sec (Thu Nov 19 12:50:30 2020)
  • waiting for system load (13.57) to calm down, total wait time: 1 hr 25 min (Thu Nov 19 12:59:37 2020)
  • waiting for system load (12.31) to calm down, total wait time: 1 hr 49 min (Thu Nov 19 13:32:44 2020)
  • waiting for system load (10.52) to calm down, total wait time: 2 hr 4 min (Thu Nov 19 13:56:51 2020)
  • waiting for system load (10.70) to calm down, total wait time: 2 hr 19 min (Thu Nov 19 14:11:14 2020)
  • waiting for system load (11.07) to calm down, total wait time: 2 hr 36 min (Thu Nov 19 14:26:26 2020)
  • waiting for system load (10.22) to calm down, total wait time: 2 hr 49 min (Thu Nov 19 14:43:28 2020)
  • waiting for system load (7.47) to calm down, total wait time: 2 hr 53 min (Thu Nov 19 14:56:32 2020)
  • waiting for system load (11.50) to calm down, total wait time: 3 hr 13 min (Thu Nov 19 15:01:03 2020)
  • waiting for system load (9.36) to calm down, total wait time: 3 hr 22 min (Thu Nov 19 15:20:21 2020)
  • waiting for system load (8.41) to calm down, total wait time: 3 hr 29 min (Thu Nov 19 15:30:05 2020)
  • running now (Thu Nov 19 15:36:52 2020)
  • converting pdb into xyzr (Thu Nov 19 15:36:52 2020)
  • waiting for system load (8.18) to calm down, total wait time: 3 hr 35 min (Thu Nov 19 15:36:52 2020)
  • waiting for system load (10.84) to calm down, total wait time: 3 hr 51 min (Thu Nov 19 15:43:03 2020)
  • waiting for system load (9.73) to calm down, total wait time: 4 hr 2 min (Thu Nov 19 15:58:56 2020)
  • waiting for system load (9.25) to calm down, total wait time: 4 hr 12 min (Thu Nov 19 16:10:01 2020)
  • waiting for system load (8.90) to calm down, total wait time: 4 hr 20 min (Thu Nov 19 16:19:23 2020)
  • waiting for system load (8.23) to calm down, total wait time: 4 hr 26 min (Thu Nov 19 16:27:36 2020)
  • waiting for system load (11.00) to calm down, total wait time: 4 hr 43 min (Thu Nov 19 16:33:54 2020)
  • waiting for system load (10.61) to calm down, total wait time: 4 hr 58 min (Thu Nov 19 16:50:34 2020)
  • waiting for system load (9.41) to calm down, total wait time: 5 hr 8 min (Thu Nov 19 17:05:22 2020)
  • waiting for system load (9.68) to calm down, total wait time: 5 hr 18 min (Thu Nov 19 17:15:17 2020)
  • waiting for system load (8.05) to calm down, total wait time: 5 hr 24 min (Thu Nov 19 17:26:11 2020)
  • waiting for system load (14.48) to calm down, total wait time: 6 hr 5 min (Thu Nov 19 17:32:02 2020)
  • waiting for system load (10.66) to calm down, total wait time: 6 hr 20 min (Thu Nov 19 18:12:52 2020)
  • waiting for system load (12.91) to calm down, total wait time: 6 hr 48 min (Thu Nov 19 18:27:53 2020)
  • waiting for system load (11.25) to calm down, total wait time: 7 hr 6 min (Thu Nov 19 18:56:03 2020)
  • waiting for system load (12.75) to calm down, total wait time: 7 hr 33 min (Thu Nov 19 19:14:00 2020)
  • running now (Thu Nov 19 19:41:02 2020)
  • completed conversion of PDB file: 2020.nov19.933.pdb (size: 0k) (Thu Nov 19 19:41:03 2020)
  • converted 15 atoms of 15 atoms (Thu Nov 19 19:41:03 2020)
  • found 15 atoms in pdb (Thu Nov 19 19:41:03 2020)
  • waiting for system load (9.46) to calm down, total wait time: 7 hr 43 min (Thu Nov 19 19:41:03 2020)
  • waiting for system load (9.37) to calm down, total wait time: 7 hr 53 min (Thu Nov 19 19:51:09 2020)
  • waiting for system load (11.76) to calm down, total wait time: 8 hr 14 min (Thu Nov 19 20:00:55 2020)
  • waiting for system load (12.70) to calm down, total wait time: 8 hr 41 min (Thu Nov 19 20:21:41 2020)
  • waiting for system load (12.59) to calm down, total wait time: 9 hr 7 min (Thu Nov 19 20:48:23 2020)
  • waiting for system load (13.47) to calm down, total wait time: 9 hr 39 min (Thu Nov 19 21:14:20 2020)
  • waiting for system load (12.04) to calm down, total wait time: 10 hr 1 min (Thu Nov 19 21:46:39 2020)
  • waiting for system load (12.82) to calm down, total wait time: 10 hr 29 min (Thu Nov 19 22:09:05 2020)
  • waiting for system load (11.54) to calm down, total wait time: 10 hr 48 min (Thu Nov 19 22:36:37 2020)
  • waiting for system load (12.64) to calm down, total wait time: 11 hr 15 min (Thu Nov 19 22:56:08 2020)
  • waiting for system load (13.58) to calm down, total wait time: 11 hr 48 min (Thu Nov 19 23:22:25 2020)
  • waiting for system load (12.54) to calm down, total wait time: 12 hr 13 min (Thu Nov 19 23:55:36 2020)
  • waiting for system load (12.61) to calm down, total wait time: 12 hr 40 min (Fri Nov 20 00:21:13 2020)
  • waiting for system load (15.14) to calm down, total wait time: 13 hr 27 min (Fri Nov 20 00:47:18 2020)
  • waiting for system load (10.31) to calm down, total wait time: 13 hr 40 min (Fri Nov 20 01:34:26 2020)
  • waiting for system load (11.69) to calm down, total wait time: 14 hr 0 min (Fri Nov 20 01:47:53 2020)
  • waiting for system load (13.27) to calm down, total wait time: 14 hr 31 min (Fri Nov 20 02:08:15 2020)
  • waiting for system load (11.39) to calm down, total wait time: 14 hr 50 min (Fri Nov 20 02:39:02 2020)
  • waiting for system load (13.31) to calm down, total wait time: 15 hr 21 min (Fri Nov 20 02:57:44 2020)
  • running now (Fri Nov 20 03:28:50 2020)
  • running 3v volume program (Fri Nov 20 03:28:50 2020)
  • waiting for system load (10.40) to calm down, total wait time: 15 hr 35 min (Fri Nov 20 03:28:50 2020)
  • waiting for system load (12.05) to calm down, total wait time: 15 hr 57 min (Fri Nov 20 03:42:40 2020)
  • waiting for system load (12.62) to calm down, total wait time: 16 hr 24 min (Fri Nov 20 04:05:10 2020)
  • waiting for system load (12.63) to calm down, total wait time: 16 hr 50 min (Fri Nov 20 04:31:19 2020)
  • waiting for system load (14.21) to calm down, total wait time: 17 hr 28 min (Fri Nov 20 04:57:32 2020)
  • waiting for system load (11.70) to calm down, total wait time: 17 hr 49 min (Fri Nov 20 05:35:58 2020)
  • waiting for system load (10.61) to calm down, total wait time: 18 hr 3 min (Fri Nov 20 05:56:23 2020)
  • waiting for system load (9.36) to calm down, total wait time: 18 hr 13 min (Fri Nov 20 06:11:11 2020)
  • waiting for system load (11.78) to calm down, total wait time: 18 hr 34 min (Fri Nov 20 06:20:55 2020)
  • waiting for system load (12.36) to calm down, total wait time: 18 hr 58 min (Fri Nov 20 06:41:48 2020)
  • waiting for system load (9.09) to calm down, total wait time: 19 hr 7 min (Fri Nov 20 07:06:14 2020)
  • waiting for system load (10.04) to calm down, total wait time: 19 hr 20 min (Fri Nov 20 07:15:04 2020)
  • waiting for system load (8.04) to calm down, total wait time: 19 hr 25 min (Fri Nov 20 07:27:23 2020)
  • waiting for system load (8.83) to calm down, total wait time: 19 hr 33 min (Fri Nov 20 07:33:12 2020)
  • waiting for system load (9.25) to calm down, total wait time: 19 hr 43 min (Fri Nov 20 07:41:12 2020)
  • waiting for system load (10.35) to calm down, total wait time: 19 hr 56 min (Fri Nov 20 07:50:34 2020)
  • running now (Fri Nov 20 08:04:12 2020)
  • waiting for system load (9.42) to calm down, total wait time: 20 hr 6 min (Fri Nov 20 08:04:14 2020)
  • waiting for system load (7.34) to calm down, total wait time: 20 hr 11 min (Fri Nov 20 08:14:11 2020)
  • waiting for system load (9.29) to calm down, total wait time: 20 hr 20 min (Fri Nov 20 08:18:26 2020)
  • waiting for system load (8.83) to calm down, total wait time: 20 hr 28 min (Fri Nov 20 08:27:56 2020)
  • waiting for system load (7.56) to calm down, total wait time: 20 hr 33 min (Fri Nov 20 08:35:56 2020)
  • waiting for system load (11.72) to calm down, total wait time: 20 hr 53 min (Fri Nov 20 08:40:39 2020)
  • waiting for system load (6.87) to calm down, total wait time: 20 hr 57 min (Fri Nov 20 09:01:11 2020)
  • waiting for system load (8.45) to calm down, total wait time: 21 hr 4 min (Fri Nov 20 09:04:34 2020)
  • running now (Fri Nov 20 09:11:27 2020)
  • smoothing out volume (Fri Nov 20 09:11:27 2020)
  • waiting for system load (4.89) to calm down, total wait time: 21 hr 5 min (Fri Nov 20 09:11:27 2020)
  • waiting for system load (5.83) to calm down, total wait time: 21 hr 6 min (Fri Nov 20 09:12:26 2020)
  • waiting for system load (3.95) to calm down, total wait time: 21 hr 7 min (Fri Nov 20 09:14:19 2020)
  • waiting for system load (5.63) to calm down, total wait time: 21 hr 9 min (Fri Nov 20 09:14:45 2020)
  • waiting for system load (11.23) to calm down, total wait time: 21 hr 26 min (Fri Nov 20 09:16:24 2020)
  • waiting for system load (8.37) to calm down, total wait time: 21 hr 33 min (Fri Nov 20 09:34:15 2020)
  • running now (Fri Nov 20 09:40:56 2020)
  • imaging volume (download mrc) with UCSF Chimera (Fri Nov 20 09:40:56 2020)
  • UCSF Chimera created Jmol compatible file (Fri Nov 20 09:41:03 2020)
  • compressing 2020.nov19.933.obj (Fri Nov 20 09:41:03 2020)
  • waiting for system load (4.65) to calm down, total wait time: 21 hr 34 min (Fri Nov 20 09:41:03 2020)
  • waiting for system load (3.60) to calm down, total wait time: 21 hr 34 min (Fri Nov 20 09:41:52 2020)
  • waiting for system load (3.17) to calm down, total wait time: 21 hr 34 min (Fri Nov 20 09:42:09 2020)
  • running now (Fri Nov 20 09:42:20 2020)
  • waiting for system load (2.99) to calm down, total wait time: 21 hr 34 min (Fri Nov 20 09:42:20 2020)
  • waiting for system load (3.00) to calm down, total wait time: 21 hr 35 min (Fri Nov 20 09:42:28 2020)
  • waiting for system load (3.15) to calm down, total wait time: 21 hr 35 min (Fri Nov 20 09:42:36 2020)
  • running now (Fri Nov 20 09:42:46 2020)
  • UCSF Chimera completed in 1 hr 39 min (Fri Nov 20 09:42:46 2020)
  • analyzing volume (Fri Nov 20 09:42:46 2020)
  • normal CoM (-0.6, -1.5, -0.8) Å (Fri Nov 20 09:42:47 2020)
  • reduced center failed (Fri Nov 20 09:42:47 2020)
  • volume analysis completed in 0.52 sec (Fri Nov 20 09:42:47 2020)
  • compressing 2020.nov19.933.mrc (Fri Nov 20 09:42:47 2020)
  • waiting for system load (3.44) to calm down, total wait time: 21 hr 35 min (Fri Nov 20 09:42:47 2020)
  • waiting for system load (4.61) to calm down, total wait time: 21 hr 36 min (Fri Nov 20 09:43:01 2020)
  • waiting for system load (6.43) to calm down, total wait time: 21 hr 38 min (Fri Nov 20 09:43:49 2020)
  • waiting for system load (8.25) to calm down, total wait time: 21 hr 45 min (Fri Nov 20 09:46:29 2020)
  • waiting for system load (4.14) to calm down, total wait time: 21 hr 45 min (Fri Nov 20 09:52:50 2020)
  • waiting for system load (6.05) to calm down, total wait time: 21 hr 47 min (Fri Nov 20 09:53:21 2020)
  • waiting for system load (6.47) to calm down, total wait time: 21 hr 50 min (Fri Nov 20 09:55:30 2020)
  • waiting for system load (7.18) to calm down, total wait time: 21 hr 54 min (Fri Nov 20 09:58:14 2020)
  • waiting for system load (11.35) to calm down, total wait time: 22 hr 13 min (Fri Nov 20 10:02:10 2020)
  • running now (Fri Nov 20 10:20:39 2020)
  • waiting for system load (4.76) to calm down, total wait time: 22 hr 14 min (Fri Nov 20 10:20:39 2020)
  • waiting for system load (4.56) to calm down, total wait time: 22 hr 14 min (Fri Nov 20 10:21:33 2020)
  • waiting for system load (4.50) to calm down, total wait time: 22 hr 15 min (Fri Nov 20 10:22:18 2020)
  • waiting for system load (5.34) to calm down, total wait time: 22 hr 16 min (Fri Nov 20 10:23:01 2020)
  • waiting for system load (6.02) to calm down, total wait time: 22 hr 18 min (Fri Nov 20 10:24:23 2020)
  • waiting for system load (5.21) to calm down, total wait time: 22 hr 20 min (Fri Nov 20 10:26:30 2020)
  • waiting for system load (5.24) to calm down, total wait time: 22 hr 21 min (Fri Nov 20 10:27:44 2020)
  • waiting for system load (5.95) to calm down, total wait time: 22 hr 23 min (Fri Nov 20 10:29:01 2020)
  • waiting for system load (7.39) to calm down, total wait time: 22 hr 27 min (Fri Nov 20 10:31:02 2020)
  • running now (Fri Nov 20 10:35:23 2020)
  • FINISHED (Fri Nov 20 10:35:24 2020)

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Log file display

Show last lines of log file 
Terminal display
		
Message: waiting for system load (4.61) to calm down, total wait time: 21 hr 36 min 
Message: waiting for system load (6.43) to calm down, total wait time: 21 hr 38 min 
Message: waiting for system load (8.25) to calm down, total wait time: 21 hr 45 min 
Message: waiting for system load (4.14) to calm down, total wait time: 21 hr 45 min 
Message: waiting for system load (6.05) to calm down, total wait time: 21 hr 47 min 
Message: waiting for system load (6.47) to calm down, total wait time: 21 hr 50 min 
Message: waiting for system load (7.18) to calm down, total wait time: 21 hr 54 min 
Message: waiting for system load (11.35) to calm down, total wait time: 22 hr 13 min 
Message: running now 
Message: waiting for system load (4.76) to calm down, total wait time: 22 hr 14 min 
Message: waiting for system load (4.56) to calm down, total wait time: 22 hr 14 min 
Message: waiting for system load (4.50) to calm down, total wait time: 22 hr 15 min 
Message: waiting for system load (5.34) to calm down, total wait time: 22 hr 16 min 
Message: waiting for system load (6.02) to calm down, total wait time: 22 hr 18 min 
Message: waiting for system load (5.21) to calm down, total wait time: 22 hr 20 min 
Message: waiting for system load (5.24) to calm down, total wait time: 22 hr 21 min 
Message: waiting for system load (5.95) to calm down, total wait time: 22 hr 23 min 
Message: waiting for system load (7.39) to calm down, total wait time: 22 hr 27 min 
Message: running now 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
Download source code
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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