3v Running Log for JobId '2020.nov19.a1d'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=131.111.112.119 (Thu Nov 19 12:10:17 2020)
  • waiting for system load (10.35) to calm down, total wait time: 13 min 38 sec (Thu Nov 19 12:10:17 2020)
  • waiting for system load (12.04) to calm down, total wait time: 36 min 3 sec (Thu Nov 19 12:23:55 2020)
  • waiting for system load (9.94) to calm down, total wait time: 47 min 58 sec (Thu Nov 19 12:46:20 2020)
  • waiting for system load (12.39) to calm down, total wait time: 1 hr 13 min (Thu Nov 19 12:58:15 2020)
  • waiting for system load (12.50) to calm down, total wait time: 1 hr 38 min (Thu Nov 19 13:22:53 2020)
  • waiting for system load (11.18) to calm down, total wait time: 1 hr 56 min (Thu Nov 19 13:48:14 2020)
  • waiting for system load (11.73) to calm down, total wait time: 2 hr 16 min (Thu Nov 19 14:05:49 2020)
  • waiting for system load (11.07) to calm down, total wait time: 2 hr 33 min (Thu Nov 19 14:26:25 2020)
  • waiting for system load (10.24) to calm down, total wait time: 2 hr 46 min (Thu Nov 19 14:43:26 2020)
  • waiting for system load (7.75) to calm down, total wait time: 2 hr 51 min (Thu Nov 19 14:56:35 2020)
  • waiting for system load (10.64) to calm down, total wait time: 3 hr 6 min (Thu Nov 19 15:01:43 2020)
  • waiting for system load (9.18) to calm down, total wait time: 3 hr 15 min (Thu Nov 19 15:16:39 2020)
  • waiting for system load (9.12) to calm down, total wait time: 3 hr 24 min (Thu Nov 19 15:25:47 2020)
  • waiting for system load (9.93) to calm down, total wait time: 3 hr 36 min (Thu Nov 19 15:34:42 2020)
  • running now (Thu Nov 19 15:46:34 2020)
  • converting pdb into xyzr (Thu Nov 19 15:46:34 2020)
  • waiting for system load (7.51) to calm down, total wait time: 3 hr 41 min (Thu Nov 19 15:46:34 2020)
  • waiting for system load (9.94) to calm down, total wait time: 3 hr 53 min (Thu Nov 19 15:51:11 2020)
  • waiting for system load (9.14) to calm down, total wait time: 4 hr 2 min (Thu Nov 19 16:03:05 2020)
  • waiting for system load (9.77) to calm down, total wait time: 4 hr 13 min (Thu Nov 19 16:12:05 2020)
  • waiting for system load (11.41) to calm down, total wait time: 4 hr 32 min (Thu Nov 19 16:23:20 2020)
  • waiting for system load (10.83) to calm down, total wait time: 4 hr 48 min (Thu Nov 19 16:42:08 2020)
  • waiting for system load (10.36) to calm down, total wait time: 5 hr 1 min (Thu Nov 19 16:57:58 2020)
  • waiting for system load (9.90) to calm down, total wait time: 5 hr 13 min (Thu Nov 19 17:11:38 2020)
  • waiting for system load (10.24) to calm down, total wait time: 5 hr 26 min (Thu Nov 19 17:23:23 2020)
  • waiting for system load (13.28) to calm down, total wait time: 5 hr 57 min (Thu Nov 19 17:36:32 2020)
  • waiting for system load (12.51) to calm down, total wait time: 6 hr 22 min (Thu Nov 19 18:07:24 2020)
  • waiting for system load (10.85) to calm down, total wait time: 6 hr 38 min (Thu Nov 19 18:32:49 2020)
  • waiting for system load (11.37) to calm down, total wait time: 6 hr 57 min (Thu Nov 19 18:48:45 2020)
  • waiting for system load (11.64) to calm down, total wait time: 7 hr 17 min (Thu Nov 19 19:07:21 2020)
  • waiting for system load (11.72) to calm down, total wait time: 7 hr 38 min (Thu Nov 19 19:27:25 2020)
  • waiting for system load (11.62) to calm down, total wait time: 7 hr 58 min (Thu Nov 19 19:47:58 2020)
  • waiting for system load (14.49) to calm down, total wait time: 8 hr 39 min (Thu Nov 19 20:07:56 2020)
  • waiting for system load (12.72) to calm down, total wait time: 9 hr 5 min (Thu Nov 19 20:48:51 2020)
  • waiting for system load (13.25) to calm down, total wait time: 9 hr 36 min (Thu Nov 19 21:15:41 2020)
  • waiting for system load (12.16) to calm down, total wait time: 9 hr 59 min (Thu Nov 19 21:46:19 2020)
  • running now (Thu Nov 19 22:09:29 2020)
  • completed conversion of PDB file: 2020.nov19.a1d.pdb (size: 0k) (Thu Nov 19 22:09:30 2020)
  • converted 15 atoms of 15 atoms (Thu Nov 19 22:09:30 2020)
  • found 15 atoms in pdb (Thu Nov 19 22:09:30 2020)
  • waiting for system load (11.60) to calm down, total wait time: 10 hr 19 min (Thu Nov 19 22:09:30 2020)
  • waiting for system load (12.99) to calm down, total wait time: 10 hr 48 min (Thu Nov 19 22:29:21 2020)
  • waiting for system load (14.28) to calm down, total wait time: 11 hr 27 min (Thu Nov 19 22:58:05 2020)
  • waiting for system load (13.19) to calm down, total wait time: 11 hr 57 min (Thu Nov 19 23:37:07 2020)
  • waiting for system load (13.15) to calm down, total wait time: 12 hr 27 min (Fri Nov 20 00:07:19 2020)
  • waiting for system load (12.83) to calm down, total wait time: 12 hr 54 min (Fri Nov 20 00:37:13 2020)
  • waiting for system load (12.20) to calm down, total wait time: 13 hr 18 min (Fri Nov 20 01:04:48 2020)
  • waiting for system load (12.95) to calm down, total wait time: 13 hr 46 min (Fri Nov 20 01:28:13 2020)
  • waiting for system load (13.55) to calm down, total wait time: 14 hr 19 min (Fri Nov 20 01:56:40 2020)
  • waiting for system load (11.54) to calm down, total wait time: 14 hr 39 min (Fri Nov 20 02:29:37 2020)
  • waiting for system load (11.47) to calm down, total wait time: 14 hr 58 min (Fri Nov 20 02:49:08 2020)
  • waiting for system load (12.60) to calm down, total wait time: 15 hr 24 min (Fri Nov 20 03:08:16 2020)
  • waiting for system load (11.92) to calm down, total wait time: 15 hr 46 min (Fri Nov 20 03:34:17 2020)
  • waiting for system load (12.17) to calm down, total wait time: 16 hr 9 min (Fri Nov 20 03:56:00 2020)
  • waiting for system load (13.94) to calm down, total wait time: 16 hr 45 min (Fri Nov 20 04:19:13 2020)
  • waiting for system load (11.85) to calm down, total wait time: 17 hr 6 min (Fri Nov 20 04:55:20 2020)
  • waiting for system load (10.71) to calm down, total wait time: 17 hr 22 min (Fri Nov 20 05:16:38 2020)
  • waiting for system load (12.07) to calm down, total wait time: 17 hr 44 min (Fri Nov 20 05:31:54 2020)
  • waiting for system load (11.15) to calm down, total wait time: 18 hr 2 min (Fri Nov 20 05:54:30 2020)
  • running now (Fri Nov 20 06:11:56 2020)
  • running 3v volume program (Fri Nov 20 06:11:56 2020)
  • waiting for system load (10.32) to calm down, total wait time: 18 hr 15 min (Fri Nov 20 06:11:56 2020)
  • waiting for system load (9.53) to calm down, total wait time: 18 hr 25 min (Fri Nov 20 06:25:26 2020)
  • waiting for system load (10.61) to calm down, total wait time: 18 hr 40 min (Fri Nov 20 06:35:47 2020)
  • waiting for system load (10.12) to calm down, total wait time: 18 hr 53 min (Fri Nov 20 06:50:35 2020)
  • waiting for system load (10.58) to calm down, total wait time: 19 hr 7 min (Fri Nov 20 07:03:13 2020)
  • waiting for system load (8.76) to calm down, total wait time: 19 hr 15 min (Fri Nov 20 07:17:53 2020)
  • waiting for system load (8.42) to calm down, total wait time: 19 hr 22 min (Fri Nov 20 07:25:40 2020)
  • waiting for system load (9.33) to calm down, total wait time: 19 hr 32 min (Fri Nov 20 07:32:29 2020)
  • waiting for system load (8.30) to calm down, total wait time: 19 hr 38 min (Fri Nov 20 07:42:07 2020)
  • waiting for system load (11.79) to calm down, total wait time: 19 hr 59 min (Fri Nov 20 07:48:36 2020)
  • waiting for system load (8.48) to calm down, total wait time: 20 hr 6 min (Fri Nov 20 08:09:33 2020)
  • waiting for system load (7.97) to calm down, total wait time: 20 hr 12 min (Fri Nov 20 08:16:31 2020)
  • waiting for system load (8.89) to calm down, total wait time: 20 hr 20 min (Fri Nov 20 08:22:10 2020)
  • waiting for system load (9.41) to calm down, total wait time: 20 hr 30 min (Fri Nov 20 08:30:22 2020)
  • waiting for system load (11.98) to calm down, total wait time: 20 hr 52 min (Fri Nov 20 08:40:17 2020)
  • running now (Fri Nov 20 09:02:21 2020)
  • waiting for system load (6.49) to calm down, total wait time: 20 hr 55 min (Fri Nov 20 09:02:22 2020)
  • waiting for system load (7.87) to calm down, total wait time: 21 hr 0 min (Fri Nov 20 09:05:07 2020)
  • waiting for system load (4.15) to calm down, total wait time: 21 hr 1 min (Fri Nov 20 09:10:32 2020)
  • waiting for system load (4.62) to calm down, total wait time: 21 hr 1 min (Fri Nov 20 09:11:03 2020)
  • waiting for system load (5.21) to calm down, total wait time: 21 hr 3 min (Fri Nov 20 09:11:51 2020)
  • waiting for system load (5.47) to calm down, total wait time: 21 hr 4 min (Fri Nov 20 09:13:06 2020)
  • running now (Fri Nov 20 09:14:35 2020)
  • smoothing out volume (Fri Nov 20 09:14:35 2020)
  • waiting for system load (4.65) to calm down, total wait time: 21 hr 5 min (Fri Nov 20 09:14:35 2020)
  • waiting for system load (8.80) to calm down, total wait time: 21 hr 13 min (Fri Nov 20 09:15:24 2020)
  • waiting for system load (5.37) to calm down, total wait time: 21 hr 14 min (Fri Nov 20 09:23:19 2020)
  • running now (Fri Nov 20 09:24:42 2020)
  • imaging volume (download mrc) with UCSF Chimera (Fri Nov 20 09:24:43 2020)
  • UCSF Chimera created Jmol compatible file (Fri Nov 20 09:24:46 2020)
  • compressing 2020.nov19.a1d.obj (Fri Nov 20 09:24:46 2020)
  • waiting for system load (3.50) to calm down, total wait time: 21 hr 15 min (Fri Nov 20 09:24:46 2020)
  • waiting for system load (3.31) to calm down, total wait time: 21 hr 15 min (Fri Nov 20 09:25:02 2020)
  • waiting for system load (3.11) to calm down, total wait time: 21 hr 15 min (Fri Nov 20 09:25:14 2020)
  • running now (Fri Nov 20 09:25:24 2020)
  • waiting for system load (2.94) to calm down, total wait time: 21 hr 15 min (Fri Nov 20 09:25:24 2020)
  • waiting for system load (3.26) to calm down, total wait time: 21 hr 15 min (Fri Nov 20 09:25:31 2020)
  • waiting for system load (3.68) to calm down, total wait time: 21 hr 16 min (Fri Nov 20 09:25:43 2020)
  • waiting for system load (4.33) to calm down, total wait time: 21 hr 16 min (Fri Nov 20 09:26:02 2020)
  • waiting for system load (4.75) to calm down, total wait time: 21 hr 17 min (Fri Nov 20 09:26:39 2020)
  • waiting for system load (5.17) to calm down, total wait time: 21 hr 18 min (Fri Nov 20 09:27:32 2020)
  • running now (Fri Nov 20 09:28:45 2020)
  • UCSF Chimera completed in 26 min 24 sec (Fri Nov 20 09:28:45 2020)
  • analyzing volume (Fri Nov 20 09:28:45 2020)
  • normal CoM (-4.6, -1.5, -0.9) Å (Fri Nov 20 09:28:45 2020)
  • reduced center failed (Fri Nov 20 09:28:45 2020)
  • volume analysis completed in 66.62 msec (Fri Nov 20 09:28:45 2020)
  • compressing 2020.nov19.a1d.mrc (Fri Nov 20 09:28:45 2020)
  • waiting for system load (4.37) to calm down, total wait time: 21 hr 19 min (Fri Nov 20 09:28:45 2020)
  • waiting for system load (3.70) to calm down, total wait time: 21 hr 19 min (Fri Nov 20 09:29:24 2020)
  • waiting for system load (3.50) to calm down, total wait time: 21 hr 19 min (Fri Nov 20 09:29:43 2020)
  • running now (Fri Nov 20 09:29:59 2020)
  • waiting for system load (3.46) to calm down, total wait time: 21 hr 20 min (Fri Nov 20 09:29:59 2020)
  • waiting for system load (3.50) to calm down, total wait time: 21 hr 20 min (Fri Nov 20 09:30:14 2020)
  • waiting for system load (4.28) to calm down, total wait time: 21 hr 21 min (Fri Nov 20 09:30:30 2020)
  • waiting for system load (5.78) to calm down, total wait time: 21 hr 22 min (Fri Nov 20 09:31:05 2020)
  • waiting for system load (8.64) to calm down, total wait time: 21 hr 30 min (Fri Nov 20 09:32:55 2020)
  • waiting for system load (5.13) to calm down, total wait time: 21 hr 31 min (Fri Nov 20 09:40:21 2020)
  • running now (Fri Nov 20 09:41:31 2020)
  • FINISHED (Fri Nov 20 09:41:31 2020)

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Log file display

Show last lines of log file 
Terminal display
		
Message: UCSF Chimera completed in 26 min 24 sec 
OBJFILE /var/www/html/3vee/output/2020/nov19/a1d/2020.nov19.a1d.obj.gz 
Message: analyzing volume 
Message: normal CoM (-4.6, -1.5, -0.9) Å 
Message: reduced center failed 
Message: volume analysis completed in 66.62 msec 
Message: compressing 2020.nov19.a1d.mrc 
Message: waiting for system load (4.37) to calm down, total wait time: 21 hr 19 min 
Message: waiting for system load (3.70) to calm down, total wait time: 21 hr 19 min 
Message: waiting for system load (3.50) to calm down, total wait time: 21 hr 19 min 
Message: running now 
Message: waiting for system load (3.46) to calm down, total wait time: 21 hr 20 min 
Message: waiting for system load (3.50) to calm down, total wait time: 21 hr 20 min 
Message: waiting for system load (4.28) to calm down, total wait time: 21 hr 21 min 
Message: waiting for system load (5.78) to calm down, total wait time: 21 hr 22 min 
Message: waiting for system load (8.64) to calm down, total wait time: 21 hr 30 min 
Message: waiting for system load (5.13) to calm down, total wait time: 21 hr 31 min 
Message: running now 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
Download source code
Help
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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