3v Running Log for JobId '2020.nov19.dd1'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=131.111.112.119 (Thu Nov 19 12:28:18 2020)
  • waiting for system load (8.15) to calm down, total wait time: 6 min 6 sec (Thu Nov 19 12:28:18 2020)
  • waiting for system load (10.97) to calm down, total wait time: 22 min 37 sec (Thu Nov 19 12:34:24 2020)
  • waiting for system load (9.25) to calm down, total wait time: 31 min 58 sec (Thu Nov 19 12:50:55 2020)
  • waiting for system load (13.17) to calm down, total wait time: 62 min 1 sec (Thu Nov 19 13:00:17 2020)
  • waiting for system load (11.16) to calm down, total wait time: 1 hr 19 min (Thu Nov 19 13:30:19 2020)
  • waiting for system load (11.52) to calm down, total wait time: 1 hr 39 min (Thu Nov 19 13:47:48 2020)
  • waiting for system load (10.60) to calm down, total wait time: 1 hr 54 min (Thu Nov 19 14:07:13 2020)
  • waiting for system load (9.86) to calm down, total wait time: 2 hr 5 min (Thu Nov 19 14:21:58 2020)
  • waiting for system load (10.23) to calm down, total wait time: 2 hr 18 min (Thu Nov 19 14:33:34 2020)
  • waiting for system load (8.94) to calm down, total wait time: 2 hr 27 min (Thu Nov 19 14:46:40 2020)
  • waiting for system load (7.95) to calm down, total wait time: 2 hr 32 min (Thu Nov 19 14:55:01 2020)
  • waiting for system load (11.86) to calm down, total wait time: 2 hr 54 min (Thu Nov 19 15:00:37 2020)
  • waiting for system load (8.98) to calm down, total wait time: 3 hr 2 min (Thu Nov 19 15:21:58 2020)
  • running now (Thu Nov 19 15:30:26 2020)
  • converting pdb into xyzr (Thu Nov 19 15:30:26 2020)
  • waiting for system load (8.41) to calm down, total wait time: 3 hr 9 min (Thu Nov 19 15:30:26 2020)
  • waiting for system load (7.91) to calm down, total wait time: 3 hr 14 min (Thu Nov 19 15:37:13 2020)
  • waiting for system load (11.09) to calm down, total wait time: 3 hr 32 min (Thu Nov 19 15:42:43 2020)
  • waiting for system load (10.63) to calm down, total wait time: 3 hr 46 min (Thu Nov 19 15:59:51 2020)
  • waiting for system load (10.33) to calm down, total wait time: 3 hr 60 min (Thu Nov 19 16:14:44 2020)
  • waiting for system load (9.24) to calm down, total wait time: 4 hr 9 min (Thu Nov 19 16:28:16 2020)
  • waiting for system load (8.30) to calm down, total wait time: 4 hr 16 min (Thu Nov 19 16:37:36 2020)
  • waiting for system load (8.64) to calm down, total wait time: 4 hr 23 min (Thu Nov 19 16:44:05 2020)
  • waiting for system load (10.44) to calm down, total wait time: 4 hr 37 min (Thu Nov 19 16:51:31 2020)
  • waiting for system load (9.35) to calm down, total wait time: 4 hr 47 min (Thu Nov 19 17:05:33 2020)
  • waiting for system load (9.68) to calm down, total wait time: 4 hr 58 min (Thu Nov 19 17:15:15 2020)
  • waiting for system load (8.05) to calm down, total wait time: 5 hr 4 min (Thu Nov 19 17:26:09 2020)
  • waiting for system load (14.48) to calm down, total wait time: 5 hr 44 min (Thu Nov 19 17:32:00 2020)
  • waiting for system load (10.66) to calm down, total wait time: 5 hr 60 min (Thu Nov 19 18:12:50 2020)
  • waiting for system load (12.91) to calm down, total wait time: 6 hr 28 min (Thu Nov 19 18:27:51 2020)
  • waiting for system load (11.25) to calm down, total wait time: 6 hr 46 min (Thu Nov 19 18:56:01 2020)
  • waiting for system load (12.75) to calm down, total wait time: 7 hr 13 min (Thu Nov 19 19:13:58 2020)
  • running now (Thu Nov 19 19:41:01 2020)
  • completed conversion of PDB file: 2020.nov19.dd1.pdb (size: 0k) (Thu Nov 19 19:41:01 2020)
  • converted 15 atoms of 15 atoms (Thu Nov 19 19:41:01 2020)
  • found 15 atoms in pdb (Thu Nov 19 19:41:01 2020)
  • waiting for system load (9.46) to calm down, total wait time: 7 hr 23 min (Thu Nov 19 19:41:01 2020)
  • waiting for system load (9.37) to calm down, total wait time: 7 hr 33 min (Thu Nov 19 19:51:07 2020)
  • waiting for system load (11.76) to calm down, total wait time: 7 hr 53 min (Thu Nov 19 20:00:53 2020)
  • waiting for system load (12.77) to calm down, total wait time: 8 hr 20 min (Thu Nov 19 20:21:39 2020)
  • waiting for system load (12.72) to calm down, total wait time: 8 hr 47 min (Thu Nov 19 20:48:50 2020)
  • waiting for system load (13.25) to calm down, total wait time: 9 hr 18 min (Thu Nov 19 21:15:40 2020)
  • waiting for system load (12.16) to calm down, total wait time: 9 hr 41 min (Thu Nov 19 21:46:19 2020)
  • waiting for system load (11.60) to calm down, total wait time: 10 hr 1 min (Thu Nov 19 22:09:29 2020)
  • waiting for system load (12.99) to calm down, total wait time: 10 hr 30 min (Thu Nov 19 22:29:20 2020)
  • waiting for system load (14.28) to calm down, total wait time: 11 hr 9 min (Thu Nov 19 22:58:04 2020)
  • waiting for system load (13.19) to calm down, total wait time: 11 hr 39 min (Thu Nov 19 23:37:06 2020)
  • waiting for system load (13.16) to calm down, total wait time: 12 hr 9 min (Fri Nov 20 00:07:18 2020)
  • waiting for system load (12.77) to calm down, total wait time: 12 hr 36 min (Fri Nov 20 00:37:16 2020)
  • waiting for system load (11.79) to calm down, total wait time: 12 hr 57 min (Fri Nov 20 01:04:27 2020)
  • waiting for system load (13.09) to calm down, total wait time: 13 hr 26 min (Fri Nov 20 01:25:23 2020)
  • waiting for system load (12.33) to calm down, total wait time: 13 hr 51 min (Fri Nov 20 01:54:50 2020)
  • waiting for system load (14.13) to calm down, total wait time: 14 hr 28 min (Fri Nov 20 02:19:05 2020)
  • waiting for system load (14.39) to calm down, total wait time: 15 hr 8 min (Fri Nov 20 02:56:49 2020)
  • waiting for system load (12.71) to calm down, total wait time: 15 hr 35 min (Fri Nov 20 03:36:50 2020)
  • waiting for system load (13.94) to calm down, total wait time: 16 hr 11 min (Fri Nov 20 04:03:36 2020)
  • running now (Fri Nov 20 04:39:43 2020)
  • running 3v volume program (Fri Nov 20 04:39:43 2020)
  • waiting for system load (11.78) to calm down, total wait time: 16 hr 32 min (Fri Nov 20 04:39:43 2020)
  • waiting for system load (13.06) to calm down, total wait time: 17 hr 1 min (Fri Nov 20 05:00:36 2020)
  • waiting for system load (11.44) to calm down, total wait time: 17 hr 20 min (Fri Nov 20 05:29:50 2020)
  • waiting for system load (12.06) to calm down, total wait time: 17 hr 43 min (Fri Nov 20 05:48:48 2020)
  • waiting for system load (9.69) to calm down, total wait time: 17 hr 54 min (Fri Nov 20 06:11:21 2020)
  • waiting for system load (10.17) to calm down, total wait time: 18 hr 7 min (Fri Nov 20 06:22:17 2020)
  • waiting for system load (9.45) to calm down, total wait time: 18 hr 17 min (Fri Nov 20 06:35:09 2020)
  • waiting for system load (10.67) to calm down, total wait time: 18 hr 32 min (Fri Nov 20 06:45:12 2020)
  • waiting for system load (9.33) to calm down, total wait time: 18 hr 42 min (Fri Nov 20 07:00:17 2020)
  • waiting for system load (7.80) to calm down, total wait time: 18 hr 47 min (Fri Nov 20 07:09:55 2020)
  • waiting for system load (10.04) to calm down, total wait time: 18 hr 59 min (Fri Nov 20 07:15:10 2020)
  • waiting for system load (7.96) to calm down, total wait time: 19 hr 5 min (Fri Nov 20 07:27:29 2020)
  • waiting for system load (8.90) to calm down, total wait time: 19 hr 13 min (Fri Nov 20 07:33:06 2020)
  • waiting for system load (9.21) to calm down, total wait time: 19 hr 22 min (Fri Nov 20 07:41:19 2020)
  • waiting for system load (10.35) to calm down, total wait time: 19 hr 36 min (Fri Nov 20 07:50:33 2020)
  • running now (Fri Nov 20 08:04:10 2020)
  • waiting for system load (9.42) to calm down, total wait time: 19 hr 46 min (Fri Nov 20 08:04:13 2020)
  • waiting for system load (7.34) to calm down, total wait time: 19 hr 50 min (Fri Nov 20 08:14:10 2020)
  • waiting for system load (9.29) to calm down, total wait time: 19 hr 59 min (Fri Nov 20 08:18:25 2020)
  • waiting for system load (8.83) to calm down, total wait time: 20 hr 7 min (Fri Nov 20 08:27:55 2020)
  • waiting for system load (7.56) to calm down, total wait time: 20 hr 12 min (Fri Nov 20 08:35:55 2020)
  • waiting for system load (11.72) to calm down, total wait time: 20 hr 33 min (Fri Nov 20 08:40:38 2020)
  • waiting for system load (6.87) to calm down, total wait time: 20 hr 36 min (Fri Nov 20 09:01:10 2020)
  • waiting for system load (8.45) to calm down, total wait time: 20 hr 43 min (Fri Nov 20 09:04:33 2020)
  • running now (Fri Nov 20 09:11:26 2020)
  • smoothing out volume (Fri Nov 20 09:11:26 2020)
  • waiting for system load (4.89) to calm down, total wait time: 20 hr 44 min (Fri Nov 20 09:11:26 2020)
  • waiting for system load (5.83) to calm down, total wait time: 20 hr 46 min (Fri Nov 20 09:12:25 2020)
  • waiting for system load (3.95) to calm down, total wait time: 20 hr 46 min (Fri Nov 20 09:14:18 2020)
  • waiting for system load (5.63) to calm down, total wait time: 20 hr 48 min (Fri Nov 20 09:14:44 2020)
  • waiting for system load (11.23) to calm down, total wait time: 21 hr 6 min (Fri Nov 20 09:16:23 2020)
  • waiting for system load (8.37) to calm down, total wait time: 21 hr 12 min (Fri Nov 20 09:34:14 2020)
  • running now (Fri Nov 20 09:40:55 2020)
  • imaging volume (download mrc) with UCSF Chimera (Fri Nov 20 09:40:55 2020)
  • UCSF Chimera created Jmol compatible file (Fri Nov 20 09:40:59 2020)
  • compressing 2020.nov19.dd1.obj (Fri Nov 20 09:40:59 2020)
  • waiting for system load (4.71) to calm down, total wait time: 21 hr 13 min (Fri Nov 20 09:40:59 2020)
  • waiting for system load (3.74) to calm down, total wait time: 21 hr 14 min (Fri Nov 20 09:41:50 2020)
  • waiting for system load (3.08) to calm down, total wait time: 21 hr 14 min (Fri Nov 20 09:42:11 2020)
  • running now (Fri Nov 20 09:42:20 2020)
  • waiting for system load (2.99) to calm down, total wait time: 21 hr 14 min (Fri Nov 20 09:42:20 2020)
  • waiting for system load (3.00) to calm down, total wait time: 21 hr 14 min (Fri Nov 20 09:42:28 2020)
  • waiting for system load (3.15) to calm down, total wait time: 21 hr 14 min (Fri Nov 20 09:42:36 2020)
  • running now (Fri Nov 20 09:42:46 2020)
  • UCSF Chimera completed in 1 hr 39 min (Fri Nov 20 09:42:47 2020)
  • analyzing volume (Fri Nov 20 09:42:47 2020)
  • normal CoM (-4.6, -1.5, -0.9) Å (Fri Nov 20 09:42:47 2020)
  • reduced center failed (Fri Nov 20 09:42:47 2020)
  • volume analysis completed in 233.04 msec (Fri Nov 20 09:42:47 2020)
  • compressing 2020.nov19.dd1.mrc (Fri Nov 20 09:42:47 2020)
  • waiting for system load (3.44) to calm down, total wait time: 21 hr 14 min (Fri Nov 20 09:42:47 2020)
  • waiting for system load (4.61) to calm down, total wait time: 21 hr 15 min (Fri Nov 20 09:43:02 2020)
  • waiting for system load (6.43) to calm down, total wait time: 21 hr 18 min (Fri Nov 20 09:43:49 2020)
  • waiting for system load (8.25) to calm down, total wait time: 21 hr 24 min (Fri Nov 20 09:46:29 2020)
  • waiting for system load (4.14) to calm down, total wait time: 21 hr 25 min (Fri Nov 20 09:52:50 2020)
  • waiting for system load (6.05) to calm down, total wait time: 21 hr 27 min (Fri Nov 20 09:53:22 2020)
  • waiting for system load (6.47) to calm down, total wait time: 21 hr 30 min (Fri Nov 20 09:55:31 2020)
  • waiting for system load (7.18) to calm down, total wait time: 21 hr 34 min (Fri Nov 20 09:58:14 2020)
  • waiting for system load (11.35) to calm down, total wait time: 21 hr 52 min (Fri Nov 20 10:02:11 2020)
  • running now (Fri Nov 20 10:20:40 2020)
  • waiting for system load (4.76) to calm down, total wait time: 21 hr 53 min (Fri Nov 20 10:20:40 2020)
  • waiting for system load (4.56) to calm down, total wait time: 21 hr 54 min (Fri Nov 20 10:21:33 2020)
  • waiting for system load (4.50) to calm down, total wait time: 21 hr 54 min (Fri Nov 20 10:22:18 2020)
  • waiting for system load (5.39) to calm down, total wait time: 21 hr 56 min (Fri Nov 20 10:23:01 2020)
  • waiting for system load (6.02) to calm down, total wait time: 21 hr 58 min (Fri Nov 20 10:24:26 2020)
  • waiting for system load (5.19) to calm down, total wait time: 21 hr 59 min (Fri Nov 20 10:26:33 2020)
  • waiting for system load (5.30) to calm down, total wait time: 22 hr 1 min (Fri Nov 20 10:27:46 2020)
  • waiting for system load (6.19) to calm down, total wait time: 22 hr 3 min (Fri Nov 20 10:29:06 2020)
  • waiting for system load (7.04) to calm down, total wait time: 22 hr 7 min (Fri Nov 20 10:31:26 2020)
  • running now (Fri Nov 20 10:35:07 2020)
  • FINISHED (Fri Nov 20 10:35:07 2020)

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Log file display

Show last lines of log file 
Terminal display
		
Message: waiting for system load (4.61) to calm down, total wait time: 21 hr 15 min 
Message: waiting for system load (6.43) to calm down, total wait time: 21 hr 18 min 
Message: waiting for system load (8.25) to calm down, total wait time: 21 hr 24 min 
Message: waiting for system load (4.14) to calm down, total wait time: 21 hr 25 min 
Message: waiting for system load (6.05) to calm down, total wait time: 21 hr 27 min 
Message: waiting for system load (6.47) to calm down, total wait time: 21 hr 30 min 
Message: waiting for system load (7.18) to calm down, total wait time: 21 hr 34 min 
Message: waiting for system load (11.35) to calm down, total wait time: 21 hr 52 min 
Message: running now 
Message: waiting for system load (4.76) to calm down, total wait time: 21 hr 53 min 
Message: waiting for system load (4.56) to calm down, total wait time: 21 hr 54 min 
Message: waiting for system load (4.50) to calm down, total wait time: 21 hr 54 min 
Message: waiting for system load (5.39) to calm down, total wait time: 21 hr 56 min 
Message: waiting for system load (6.02) to calm down, total wait time: 21 hr 58 min 
Message: waiting for system load (5.19) to calm down, total wait time: 21 hr 59 min 
Message: waiting for system load (5.30) to calm down, total wait time: 22 hr 1 min 
Message: waiting for system load (6.19) to calm down, total wait time: 22 hr 3 min 
Message: waiting for system load (7.04) to calm down, total wait time: 22 hr 7 min 
Message: running now 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
Download source code
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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