3v Results for JobId '2021.apr07.ff3'

Run Information

biological unit: no
use hetero atoms: no
allow public display: no
grid resolution: high
probestep: 3.0
minprobe: 0.0
pymol: False
waterpdb: False
pdbfile: /var/www/html/3vee/output/uploads/2021.apr07.ff3.pdb
maxprobe: 9.0



Show running log


Images of your surface at probe size: 0.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 1210 Å3
Surface area: 1543 Å2
Sphericity, Ψ: 0.36
Effective radius: 2.35 Å
Center of Mass: (4.7, -1.0, -5.5) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 2007 Å3
Surface area: 973 Å2
Sphericity, Ψ: 0.79
Effective radius: 6.19 Å
Center of Mass: (3.7, -1.0, -6.5) Å

Downloadable files of your surface:




Images of your surface at probe size: 6.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 2213 Å3
Surface area: 959 Å2
Sphericity, Ψ: 0.86
Effective radius: 6.92 Å
Center of Mass: (4.7, -1.0, -5.5) Å

Downloadable files of your surface:




Images of your surface at probe size: 9.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 2292 Å3
Surface area: 951 Å2
Sphericity, Ψ: 0.88
Effective radius: 7.23 Å
Center of Mass: (3.7, -1.0, -6.5) Å

Downloadable files of your surface:



Downloadable files of your surface:

Show running log



Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
Download source code
Help
Site news and updates
If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
back to main page