3v Results for JobId '2021.apr08.bcd'

Run Information

biological unit: no
use hetero atoms: no
allow public display: no
grid resolution: high
probestep: 3.0
minprobe: 0.0
pymol: False
waterpdb: False
pdbfile: /var/www/html/3vee/output/uploads/2021.apr08.bcd.pdb
maxprobe: 9.0



Show running log


Images of your surface at probe size: 0.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 1448 Å3
Surface area: 1734 Å2
Sphericity, Ψ: 0.36
Effective radius: 2.51 Å
Center of Mass: (-5.7, 4.8, -0.4) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 2242 Å3
Surface area: 969 Å2
Sphericity, Ψ: 0.85
Effective radius: 6.94 Å
Center of Mass: (2.2, -1.9, -5.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 6.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 2410 Å3
Surface area: 968 Å2
Sphericity, Ψ: 0.90
Effective radius: 7.46 Å
Center of Mass: (2.2, -0.9, -4.1) Å

Downloadable files of your surface:




Images of your surface at probe size: 9.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 2454 Å3
Surface area: 968 Å2
Sphericity, Ψ: 0.91
Effective radius: 7.60 Å
Center of Mass: (2.2, -1.9, -5.0) Å

Downloadable files of your surface:



Downloadable files of your surface:

Show running log



Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
Download source code
Help
Site news and updates
If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
back to main page