3v Results for JobId '2021.jan10.dba'

Run Information

biological unit: no
use hetero atoms: no
allow public display: no
grid resolution: low
probestep: 0.5
minprobe: 0.0
pymol: False
waterpdb: False
pdbfile: /var/www/html/3vee/output/uploads/2021.jan10.dba.pdb
maxprobe: 9.0



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Images of your surface at probe size: 0.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 4933 Å3
Surface area: 4184 Å2
Sphericity, Ψ: 0.33
Effective radius: 3.54 Å
Center of Mass: (-1.7, 2.8, 1.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 0.500:

           
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Volume Information

Voxel size: 1.0 Å
Volume: 7118 Å3
Surface area: 3608 Å2
Sphericity, Ψ: 0.50
Effective radius: 5.92 Å
Center of Mass: (-3.7, 2.6, 1.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 9056 Å3
Surface area: 3483 Å2
Sphericity, Ψ: 0.60
Effective radius: 7.80 Å
Center of Mass: (-3.7, 2.4, 1.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 1.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 6737 Å3
Surface area: 2813 Å2
Sphericity, Ψ: 0.61
Effective radius: 7.18 Å
Center of Mass: (-3.7, 2.6, 1.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 7847 Å3
Surface area: 2876 Å2
Sphericity, Ψ: 0.66
Effective radius: 8.18 Å
Center of Mass: (-5.7, 2.6, 5.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 2.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 7227 Å3
Surface area: 2619 Å2
Sphericity, Ψ: 0.69
Effective radius: 8.28 Å
Center of Mass: (-5.7, 2.6, 3.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 8099 Å3
Surface area: 2707 Å2
Sphericity, Ψ: 0.72
Effective radius: 8.97 Å
Center of Mass: (-5.7, 2.6, 3.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 3.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 7916 Å3
Surface area: 2615 Å2
Sphericity, Ψ: 0.73
Effective radius: 9.08 Å
Center of Mass: (-5.6, 2.5, 3.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 8414 Å3
Surface area: 2628 Å2
Sphericity, Ψ: 0.76
Effective radius: 9.60 Å
Center of Mass: (-5.6, 2.5, 3.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 4.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 8155 Å3
Surface area: 2519 Å2
Sphericity, Ψ: 0.78
Effective radius: 9.71 Å
Center of Mass: (-7.6, 2.6, 3.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 8661 Å3
Surface area: 2540 Å2
Sphericity, Ψ: 0.80
Effective radius: 10.23 Å
Center of Mass: (-7.6, 2.5, 3.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 5.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 8319 Å3
Surface area: 2470 Å2
Sphericity, Ψ: 0.80
Effective radius: 10.10 Å
Center of Mass: (-3.5, 2.5, 1.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 6.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 8718 Å3
Surface area: 2518 Å2
Sphericity, Ψ: 0.81
Effective radius: 10.38 Å
Center of Mass: (-5.5, 2.5, 5.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 6.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 8651 Å3
Surface area: 2507 Å2
Sphericity, Ψ: 0.81
Effective radius: 10.35 Å
Center of Mass: (-5.5, 2.5, 2.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 7.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 9190 Å3
Surface area: 2545 Å2
Sphericity, Ψ: 0.83
Effective radius: 10.83 Å
Center of Mass: (-5.5, 2.4, 3.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 7.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 8911 Å3
Surface area: 2484 Å2
Sphericity, Ψ: 0.84
Effective radius: 10.76 Å
Center of Mass: (-5.5, 2.5, 3.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 8.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 9239 Å3
Surface area: 2516 Å2
Sphericity, Ψ: 0.85
Effective radius: 11.01 Å
Center of Mass: (-5.5, 2.3, 3.0) Å

Downloadable files of your surface:




Images of your surface at probe size: 8.500:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 9191 Å3
Surface area: 2495 Å2
Sphericity, Ψ: 0.85
Effective radius: 11.05 Å
Center of Mass: (-7.5, 2.4, 2.9) Å

Downloadable files of your surface:




Images of your surface at probe size: 9.000:

           
View Volume in Jmol  

Volume Information

Voxel size: 1.0 Å
Volume: 9398 Å3
Surface area: 2537 Å2
Sphericity, Ψ: 0.85
Effective radius: 11.11 Å
Center of Mass: (-7.5, 2.3, 2.9) Å

Downloadable files of your surface:



Downloadable files of your surface:

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Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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