| 3v Results for JobId '2021.jan10.dba' |
Run Information | ||
| biological unit: | no | |
| use hetero atoms: | no | |
| allow public display: | no | |
| grid resolution: | low | |
| probestep: | 0.5 | |
| minprobe: | 0.0 | |
| pymol: | False | |
| waterpdb: | False | |
| pdbfile: | /var/www/html/3vee/output/uploads/2021.jan10.dba.pdb | |
| maxprobe: | 9.0 | |
Show running log
Images of your surface at probe size: 0.000:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 4933 Å3 | |
| Surface area: | 4184 Å2 | |
| Sphericity, Ψ: | 0.33 | |
| Effective radius: | 3.54 Å | |
| Center of Mass: | (-1.7, 2.8, 1.0) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 0.500:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 7118 Å3 | |
| Surface area: | 3608 Å2 | |
| Sphericity, Ψ: | 0.50 | |
| Effective radius: | 5.92 Å | |
| Center of Mass: | (-3.7, 2.6, 1.0) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 1.000:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 9056 Å3 | |
| Surface area: | 3483 Å2 | |
| Sphericity, Ψ: | 0.60 | |
| Effective radius: | 7.80 Å | |
| Center of Mass: | (-3.7, 2.4, 1.0) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 1.500:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 6737 Å3 | |
| Surface area: | 2813 Å2 | |
| Sphericity, Ψ: | 0.61 | |
| Effective radius: | 7.18 Å | |
| Center of Mass: | (-3.7, 2.6, 1.0) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 2.000:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 7847 Å3 | |
| Surface area: | 2876 Å2 | |
| Sphericity, Ψ: | 0.66 | |
| Effective radius: | 8.18 Å | |
| Center of Mass: | (-5.7, 2.6, 5.0) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 2.500:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 7227 Å3 | |
| Surface area: | 2619 Å2 | |
| Sphericity, Ψ: | 0.69 | |
| Effective radius: | 8.28 Å | |
| Center of Mass: | (-5.7, 2.6, 3.0) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 3.000:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 8099 Å3 | |
| Surface area: | 2707 Å2 | |
| Sphericity, Ψ: | 0.72 | |
| Effective radius: | 8.97 Å | |
| Center of Mass: | (-5.7, 2.6, 3.0) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 3.500:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 7916 Å3 | |
| Surface area: | 2615 Å2 | |
| Sphericity, Ψ: | 0.73 | |
| Effective radius: | 9.08 Å | |
| Center of Mass: | (-5.6, 2.5, 3.0) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 4.000:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 8414 Å3 | |
| Surface area: | 2628 Å2 | |
| Sphericity, Ψ: | 0.76 | |
| Effective radius: | 9.60 Å | |
| Center of Mass: | (-5.6, 2.5, 3.0) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 4.500:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 8155 Å3 | |
| Surface area: | 2519 Å2 | |
| Sphericity, Ψ: | 0.78 | |
| Effective radius: | 9.71 Å | |
| Center of Mass: | (-7.6, 2.6, 3.0) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 5.000:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 8661 Å3 | |
| Surface area: | 2540 Å2 | |
| Sphericity, Ψ: | 0.80 | |
| Effective radius: | 10.23 Å | |
| Center of Mass: | (-7.6, 2.5, 3.0) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 5.500:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 8319 Å3 | |
| Surface area: | 2470 Å2 | |
| Sphericity, Ψ: | 0.80 | |
| Effective radius: | 10.10 Å | |
| Center of Mass: | (-3.5, 2.5, 1.0) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 6.000:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 8718 Å3 | |
| Surface area: | 2518 Å2 | |
| Sphericity, Ψ: | 0.81 | |
| Effective radius: | 10.38 Å | |
| Center of Mass: | (-5.5, 2.5, 5.0) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 6.500:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 8651 Å3 | |
| Surface area: | 2507 Å2 | |
| Sphericity, Ψ: | 0.81 | |
| Effective radius: | 10.35 Å | |
| Center of Mass: | (-5.5, 2.5, 2.9) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 7.000:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 9190 Å3 | |
| Surface area: | 2545 Å2 | |
| Sphericity, Ψ: | 0.83 | |
| Effective radius: | 10.83 Å | |
| Center of Mass: | (-5.5, 2.4, 3.0) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 7.500:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 8911 Å3 | |
| Surface area: | 2484 Å2 | |
| Sphericity, Ψ: | 0.84 | |
| Effective radius: | 10.76 Å | |
| Center of Mass: | (-5.5, 2.5, 3.0) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 8.000:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 9239 Å3 | |
| Surface area: | 2516 Å2 | |
| Sphericity, Ψ: | 0.85 | |
| Effective radius: | 11.01 Å | |
| Center of Mass: | (-5.5, 2.3, 3.0) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 8.500:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 9191 Å3 | |
| Surface area: | 2495 Å2 | |
| Sphericity, Ψ: | 0.85 | |
| Effective radius: | 11.05 Å | |
| Center of Mass: | (-7.5, 2.4, 2.9) Å | |
Downloadable files of your surface:
|
Images of your surface at probe size: 9.000:
View Volume in Jmol
Volume Information | ||
| Voxel size: | 1.0 Å | |
| Volume: | 9398 Å3 | |
| Surface area: | 2537 Å2 | |
| Sphericity, Ψ: | 0.85 | |
| Effective radius: | 11.11 Å | |
| Center of Mass: | (-7.5, 2.3, 2.9) Å | |
Downloadable files of your surface:
|
Downloadable files of your surface:
|
Show running log
|
Citation: '3V: cavity, channel and cleft volume calculator and extractor' (free text) Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562 by Neil R. Voss and Mark Gerstein |
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| If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com> |
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