3v Running Log for JobId '2022.aug05.57d'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=128.164.151.123 (Fri Aug 5 16:11:17 2022)
  • waiting for system load (4.29) to calm down, total wait time: 35.71 sec (Fri Aug 5 16:11:17 2022)
  • waiting for system load (4.16) to calm down, total wait time: 67.37 sec (Fri Aug 5 16:11:53 2022)
  • waiting for system load (3.88) to calm down, total wait time: 1 min 31 sec (Fri Aug 5 16:12:25 2022)
  • waiting for system load (3.58) to calm down, total wait time: 1 min 49 sec (Fri Aug 5 16:12:49 2022)
  • running now (Fri Aug 5 16:13:06 2022)
  • converting pdb into xyzr (Fri Aug 5 16:13:06 2022)
  • waiting for system load (3.41) to calm down, total wait time: 2 min 3 sec (Fri Aug 5 16:13:06 2022)
  • waiting for system load (3.32) to calm down, total wait time: 2 min 15 sec (Fri Aug 5 16:13:20 2022)
  • waiting for system load (3.27) to calm down, total wait time: 2 min 27 sec (Fri Aug 5 16:13:33 2022)
  • running now (Fri Aug 5 16:13:45 2022)
  • completed conversion of PDB file: 2022.aug05.57d.pdb (size: 63k) (Fri Aug 5 16:13:46 2022)
  • converted 2021 atoms of 2021 atoms (Fri Aug 5 16:13:46 2022)
  • found 2021 atoms in pdb (Fri Aug 5 16:13:46 2022)
  • waiting for system load (3.29) to calm down, total wait time: 2 min 39 sec (Fri Aug 5 16:13:46 2022)
  • waiting for system load (3.25) to calm down, total wait time: 2 min 51 sec (Fri Aug 5 16:13:58 2022)
  • waiting for system load (3.21) to calm down, total wait time: 3 min 2 sec (Fri Aug 5 16:14:10 2022)
  • running now (Fri Aug 5 16:14:21 2022)
  • running 3v solvent program (Fri Aug 5 16:14:21 2022)
  • waiting for system load (3.08) to calm down, total wait time: 3 min 11 sec (Fri Aug 5 16:14:21 2022)
  • waiting for system load (3.00) to calm down, total wait time: 3 min 19 sec (Fri Aug 5 16:14:30 2022)
  • running now (Fri Aug 5 16:14:38 2022)
  • imaging volume (download mrc) with UCSF Chimera (Fri Aug 5 16:14:48 2022)
  • UCSF Chimera created Jmol compatible file (Fri Aug 5 16:14:51 2022)
  • compressing 2022.aug05.57d.obj (Fri Aug 5 16:14:51 2022)
  • waiting for system load (3.30) to calm down, total wait time: 3 min 31 sec (Fri Aug 5 16:14:51 2022)
  • waiting for system load (2.95) to calm down, total wait time: 3 min 39 sec (Fri Aug 5 16:15:03 2022)
  • running now (Fri Aug 5 16:15:11 2022)
  • waiting for system load (2.65) to calm down, total wait time: 3 min 43 sec (Fri Aug 5 16:15:11 2022)
  • waiting for system load (2.52) to calm down, total wait time: 3 min 47 sec (Fri Aug 5 16:15:15 2022)
  • running now (Fri Aug 5 16:15:19 2022)
  • UCSF Chimera completed in 31.09 sec (Fri Aug 5 16:15:19 2022)
  • analyzing volume (Fri Aug 5 16:15:19 2022)
  • normal CoM (-8.2, 13.2, -7.3) Å (Fri Aug 5 16:15:21 2022)
  • reduced center failed (Fri Aug 5 16:15:21 2022)
  • volume analysis completed in 1.66 sec (Fri Aug 5 16:15:21 2022)
  • compressing 2022.aug05.57d.mrc (Fri Aug 5 16:15:21 2022)
  • waiting for system load (2.47) to calm down, total wait time: 3 min 50 sec (Fri Aug 5 16:15:21 2022)
  • running now (Fri Aug 5 16:15:24 2022)
  • waiting for system load (2.47) to calm down, total wait time: 3 min 53 sec (Fri Aug 5 16:15:24 2022)
  • running now (Fri Aug 5 16:15:27 2022)
  • FINISHED (Fri Aug 5 16:15:27 2022)

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Log file display

Show last lines of log file  
Terminal display
		
Message: compressing 2022.aug05.57d.obj 
Message: waiting for system load (3.30) to calm down, total wait time: 3 min 31 sec 
Message: waiting for system load (2.95) to calm down, total wait time: 3 min 39 sec 
Message: running now 
Message: waiting for system load (2.65) to calm down, total wait time: 3 min 43 sec 
Message: waiting for system load (2.52) to calm down, total wait time: 3 min 47 sec 
Message: running now 
Message: UCSF Chimera completed in 31.09 sec 
OBJFILE /var/www/html/3vee/output/2022/aug05/57d/2022.aug05.57d.obj.gz 
Message: analyzing volume 
Message: normal CoM (-8.2, 13.2, -7.3) Å 
Message: reduced center failed 
Message: volume analysis completed in 1.66 sec 
Message: compressing 2022.aug05.57d.mrc 
Message: waiting for system load (2.47) to calm down, total wait time: 3 min 50 sec 
Message: running now 
Message: waiting for system load (2.47) to calm down, total wait time: 3 min 53 sec 
Message: running now 
Message: FINISHED


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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