3v Running Log for JobId '2022.dec21.4e0'

Program is still running, progress is shown below

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  • host ip address=58.247.22.178 (Wed Dec 21 03:04:09 2022)
  • downloading pdb file (Wed Dec 21 03:04:09 2022)
  • completed download of PDB id 1jj2 (size: 7977 k, 100850 lines) (Wed Dec 21 03:04:10 2022)
  • converting pdb into xyzr (Wed Dec 21 03:04:10 2022)
  • completed conversion of PDB file: 1jj2-2022.dec21.4e0.pdb (size: 2826k) (Wed Dec 21 03:04:56 2022)
  • converted 90418 atoms of 90418 atoms (Wed Dec 21 03:04:56 2022)
  • found 90418 atoms in pdb (Wed Dec 21 03:04:56 2022)
  • running 3v exit tunnel program (Wed Dec 21 03:04:56 2022)
  • imaging volume (download mrc) with UCSF Chimera (Wed Dec 21 03:06:22 2022)
  • UCSF Chimera created Jmol compatible file (Wed Dec 21 03:06:57 2022)
  • compressing 1jj2-2022.dec21.4e0.obj (Wed Dec 21 03:06:57 2022)
  • waiting for system load (2.66) to calm down, total wait time: 4.67 sec (Wed Dec 21 03:06:57 2022)
  • waiting for system load (2.77) to calm down, total wait time: 10.32 sec (Wed Dec 21 03:07:01 2022)
  • running now (Wed Dec 21 03:07:07 2022)
  • waiting for system load (2.95) to calm down, total wait time: 17.83 sec (Wed Dec 21 03:07:07 2022)
  • waiting for system load (3.03) to calm down, total wait time: 26.3 sec (Wed Dec 21 03:07:14 2022)
  • running now (Wed Dec 21 03:07:23 2022)
  • UCSF Chimera completed in 61.34 sec (Wed Dec 21 03:07:23 2022)
  • analyzing volume (Wed Dec 21 03:07:23 2022)
  • normal CoM (-79.2, -105.0, -94.3) Å (Wed Dec 21 03:07:25 2022)
  • reduced center failed (Wed Dec 21 03:07:25 2022)
  • volume analysis completed in 1.32 sec (Wed Dec 21 03:07:25 2022)
  • compressing 1jj2-2022.dec21.4e0.mrc (Wed Dec 21 03:07:25 2022)
  • waiting for system load (2.64) to calm down, total wait time: 30.81 sec (Wed Dec 21 03:07:25 2022)
  • running now (Wed Dec 21 03:07:29 2022)
  • waiting for system load (2.43) to calm down, total wait time: 33.83 sec (Wed Dec 21 03:07:29 2022)
  • running now (Wed Dec 21 03:07:32 2022)
  • FINISHED (Wed Dec 21 03:07:32 2022)

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Log file display

Show last lines of log file  
Terminal display
		
Message: compressing 1jj2-2022.dec21.4e0.obj 
Message: waiting for system load (2.66) to calm down, total wait time: 4.67 sec 
Message: waiting for system load (2.77) to calm down, total wait time: 10.32 sec 
Message: running now 
Message: waiting for system load (2.95) to calm down, total wait time: 17.83 sec 
Message: waiting for system load (3.03) to calm down, total wait time: 26.3 sec 
Message: running now 
Message: UCSF Chimera completed in 61.34 sec 
OBJFILE /var/www/html/3vee/output/2022/dec21/4e0/1jj2-2022.dec21.4e0.obj.gz 
Message: analyzing volume 
Message: normal CoM (-79.2, -105.0, -94.3) Å 
Message: reduced center failed 
Message: volume analysis completed in 1.32 sec 
Message: compressing 1jj2-2022.dec21.4e0.mrc 
Message: waiting for system load (2.64) to calm down, total wait time: 30.81 sec 
Message: running now 
Message: waiting for system load (2.43) to calm down, total wait time: 33.83 sec 
Message: running now 
Message: FINISHED


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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