3v Running Log for JobId '2022.may13.3a0'

Program is still running, progress is shown below

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  • host ip address=147.188.245.212 (Fri May 13 10:25:17 2022)
  • converting pdb into xyzr (Fri May 13 10:25:17 2022)
  • completed conversion of PDB file: 2022.may13.3a0.pdb (size: 164k) (Fri May 13 10:25:21 2022)
  • converted 5243 atoms of 5243 atoms (Fri May 13 10:25:21 2022)
  • found 5243 atoms in pdb (Fri May 13 10:25:21 2022)
  • running 3v all channel program (Fri May 13 10:25:21 2022)
  • created 2 channel files (Fri May 13 10:25:23 2022)
  • Download MRC files: 1 2 (Fri May 13 10:25:23 2022)
  • imaging volume (download mrc) with UCSF Chimera (Fri May 13 10:25:23 2022)
  • UCSF Chimera created Jmol compatible file (Fri May 13 10:25:30 2022)
  • compressing channel-001.obj (Fri May 13 10:25:30 2022)
  • UCSF Chimera completed in 7.0 sec (Fri May 13 10:25:30 2022)
  • analyzing volume (Fri May 13 10:25:30 2022)
  • normal CoM (-15.1, -25.6, -38.9) Å (Fri May 13 10:25:31 2022)
  • reduced center failed (Fri May 13 10:25:32 2022)
  • volume analysis completed in 1.25 sec (Fri May 13 10:25:32 2022)
  • compressing channel-001.mrc (Fri May 13 10:25:32 2022)
  • imaging volume (download mrc) with UCSF Chimera (Fri May 13 10:25:32 2022)
  • UCSF Chimera created Jmol compatible file (Fri May 13 10:25:38 2022)
  • compressing channel-002.obj (Fri May 13 10:25:38 2022)
  • UCSF Chimera completed in 6.85 sec (Fri May 13 10:25:38 2022)
  • analyzing volume (Fri May 13 10:25:38 2022)
  • normal CoM (-59.7, -41.8, -77.8) Å (Fri May 13 10:25:39 2022)
  • reduced center failed (Fri May 13 10:25:39 2022)
  • volume analysis completed in 22.63 msec (Fri May 13 10:25:39 2022)
  • compressing channel-002.mrc (Fri May 13 10:25:39 2022)
  • tarring file list (Fri May 13 10:25:39 2022)
  • compressing channel-001.mrc (Fri May 13 10:25:39 2022)
  • compressing channel-002.mrc (Fri May 13 10:25:39 2022)
  • FINISHED (Fri May 13 10:25:39 2022)

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Log file display

Show last lines of log file  
Terminal display
		
Message: reduced center failed 
Message: volume analysis completed in 1.25 sec 
Message: compressing channel-001.mrc 
Message: imaging volume (d ... 
himera/'>UCSF Chimera 
/var/www/html/py/appionlib/apChimSnapshot.py 
Message: UCSF Chimera created Jmol compatible file 
Message: compressing channel-002.obj 
Message: UCSF Chimera completed in 6.85 sec 
OBJFILE /var/www/html/3vee/output/2022/may13/3a0/channel-002.obj.gz 
Message: analyzing volume 
Message: normal CoM (-59.7, -41.8, -77.8) Å 
Message: reduced center failed 
Message: volume analysis completed in 22.63 msec 
Message: compressing channel-002.mrc 
Message: tarring file list 
Message: compressing channel-001.mrc 
Message: compressing channel-002.mrc 
Message: FINISHED


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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