3v Results for JobId '2022.sep22.9fa'

Run Information

biological unit: no
use hetero atoms: no
allow public display: no
grid resolution: high
smallprobe: 1.5
bigprobe: 6.0
pymol: False
waterpdb: False
pdbfile: /var/www/html/3vee/output/uploads/2022.sep22.9fa.pdb
numchan: 20



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Images of channel 1:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 35450 Å3
Surface area: 24666 Å2
Sphericity, Ψ: 0.21
Effective radius: 4.31 Å
Center of Mass: (71.6, -20.8, -116.1) Å

Downloadable files of your surface:




Images of channel 2:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 1199 Å3
Surface area: 1001 Å2
Sphericity, Ψ: 0.55
Effective radius: 3.59 Å
Center of Mass: (-48.1, -45.9, -142.4) Å

Downloadable files of your surface:




Images of channel 3:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 1194 Å3
Surface area: 991 Å2
Sphericity, Ψ: 0.55
Effective radius: 3.61 Å
Center of Mass: (-45.6, -48.0, -140.4) Å

Downloadable files of your surface:




Images of channel 4:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 1188 Å3
Surface area: 979 Å2
Sphericity, Ψ: 0.55
Effective radius: 3.64 Å
Center of Mass: (-52.5, -43.2, -136.4) Å

Downloadable files of your surface:




Images of channel 5:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 797 Å3
Surface area: 704 Å2
Sphericity, Ψ: 0.59
Effective radius: 3.40 Å
Center of Mass: (-48.0, -52.1, -143.6) Å

Downloadable files of your surface:




Images of channel 6:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 1202 Å3
Surface area: 991 Å2
Sphericity, Ψ: 0.55
Effective radius: 3.64 Å
Center of Mass: (-47.9, -49.3, -140.9) Å

Downloadable files of your surface:




Images of channel 7:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 1200 Å3
Surface area: 991 Å2
Sphericity, Ψ: 0.55
Effective radius: 3.63 Å
Center of Mass: (-46.1, -49.2, -143.1) Å

Downloadable files of your surface:




Images of channel 8:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 1190 Å3
Surface area: 990 Å2
Sphericity, Ψ: 0.55
Effective radius: 3.61 Å
Center of Mass: (-51.9, -42.8, -138.2) Å

Downloadable files of your surface:




Images of channel 9:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 817 Å3
Surface area: 724 Å2
Sphericity, Ψ: 0.58
Effective radius: 3.39 Å
Center of Mass: (-49.8, -48.8, -143.7) Å

Downloadable files of your surface:




Images of channel 10:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 1214 Å3
Surface area: 1000 Å2
Sphericity, Ψ: 0.55
Effective radius: 3.64 Å
Center of Mass: (-47.9, -48.9, -144.3) Å

Downloadable files of your surface:




Images of channel 11:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 1205 Å3
Surface area: 994 Å2
Sphericity, Ψ: 0.55
Effective radius: 3.64 Å
Center of Mass: (-46.1, -49.1, -144.2) Å

Downloadable files of your surface:




Images of channel 12:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 1177 Å3
Surface area: 977 Å2
Sphericity, Ψ: 0.55
Effective radius: 3.61 Å
Center of Mass: (-52.3, -45.5, -137.7) Å

Downloadable files of your surface:




Images of channel 13:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 784 Å3
Surface area: 691 Å2
Sphericity, Ψ: 0.59
Effective radius: 3.40 Å
Center of Mass: (-48.1, -48.7, -143.3) Å

Downloadable files of your surface:




Images of channel 14:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 1551 Å3
Surface area: 1370 Å2
Sphericity, Ψ: 0.47
Effective radius: 3.40 Å
Center of Mass: (-46.9, -40.3, -140.4) Å

Downloadable files of your surface:




Images of channel 15:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 1212 Å3
Surface area: 998 Å2
Sphericity, Ψ: 0.55
Effective radius: 3.64 Å
Center of Mass: (-45.9, -45.2, -143.6) Å

Downloadable files of your surface:




Images of channel 16:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 1190 Å3
Surface area: 990 Å2
Sphericity, Ψ: 0.55
Effective radius: 3.60 Å
Center of Mass: (-51.7, -41.2, -140.1) Å

Downloadable files of your surface:




Images of channel 17:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 787 Å3
Surface area: 692 Å2
Sphericity, Ψ: 0.60
Effective radius: 3.41 Å
Center of Mass: (-50.9, -49.2, -146.4) Å

Downloadable files of your surface:




Images of channel 18:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 1199 Å3
Surface area: 996 Å2
Sphericity, Ψ: 0.55
Effective radius: 3.61 Å
Center of Mass: (-48.0, -45.5, -142.9) Å

Downloadable files of your surface:




Images of channel 19:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 1198 Å3
Surface area: 1008 Å2
Sphericity, Ψ: 0.54
Effective radius: 3.57 Å
Center of Mass: (-45.9, -47.8, -140.7) Å

Downloadable files of your surface:




Images of channel 20:

           
View Volume in Jmol  

Volume Information

Voxel size: 0.5 Å
Volume: 1171 Å3
Surface area: 973 Å2
Sphericity, Ψ: 0.55
Effective radius: 3.61 Å
Center of Mass: (-52.2, -43.3, -136.2) Å

Downloadable files of your surface:



Downloadable files of your surface:

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Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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