3v Running Log for JobId '2022.sep22.9fa'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=193.205.229.7 (Thu Sep 22 07:18:06 2022)
  • waiting for system load (3.80) to calm down, total wait time: 22.05 sec (Thu Sep 22 07:18:07 2022)
  • waiting for system load (3.87) to calm down, total wait time: 45.79 sec (Thu Sep 22 07:18:29 2022)
  • waiting for system load (3.91) to calm down, total wait time: 1 min 11 sec (Thu Sep 22 07:18:53 2022)
  • waiting for system load (3.88) to calm down, total wait time: 1 min 35 sec (Thu Sep 22 07:19:17 2022)
  • running now (Thu Sep 22 07:19:41 2022)
  • converting pdb into xyzr (Thu Sep 22 07:19:41 2022)
  • waiting for system load (3.17) to calm down, total wait time: 1 min 45 sec (Thu Sep 22 07:19:41 2022)
  • waiting for system load (2.99) to calm down, total wait time: 1 min 53 sec (Thu Sep 22 07:19:52 2022)
  • running now (Thu Sep 22 07:20:00 2022)
  • completed conversion of PDB file: 2022.sep22.9fa.pdb (size: 853k) (Thu Sep 22 07:20:20 2022)
  • converted 27280 atoms of 27280 atoms (Thu Sep 22 07:20:20 2022)
  • found 27280 atoms in pdb (Thu Sep 22 07:20:20 2022)
  • waiting for system load (2.88) to calm down, total wait time: 1 min 60 sec (Thu Sep 22 07:20:20 2022)
  • waiting for system load (2.81) to calm down, total wait time: 2 min 6 sec (Thu Sep 22 07:20:27 2022)
  • running now (Thu Sep 22 07:20:33 2022)
  • running 3v all channel program (Thu Sep 22 07:20:33 2022)
  • waiting for system load (2.75) to calm down, total wait time: 2 min 11 sec (Thu Sep 22 07:20:33 2022)
  • waiting for system load (2.63) to calm down, total wait time: 2 min 15 sec (Thu Sep 22 07:20:38 2022)
  • running now (Thu Sep 22 07:20:43 2022)
  • created 20 channel files (Thu Sep 22 07:33:03 2022)
  • Download MRC files: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 (Thu Sep 22 07:33:03 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:33:03 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:33:38 2022)
  • compressing channel-001.obj (Thu Sep 22 07:33:38 2022)
  • waiting for system load (5.30) to calm down, total wait time: 3 min 35 sec (Thu Sep 22 07:33:38 2022)
  • waiting for system load (2.95) to calm down, total wait time: 3 min 43 sec (Thu Sep 22 07:34:58 2022)
  • running now (Thu Sep 22 07:35:05 2022)
  • waiting for system load (2.80) to calm down, total wait time: 3 min 49 sec (Thu Sep 22 07:35:05 2022)
  • waiting for system load (2.74) to calm down, total wait time: 3 min 54 sec (Thu Sep 22 07:35:11 2022)
  • running now (Thu Sep 22 07:35:17 2022)
  • UCSF Chimera completed in 2 min 22 sec (Thu Sep 22 07:35:25 2022)
  • analyzing volume (Thu Sep 22 07:35:25 2022)
  • normal CoM (71.6, -20.8, -116.1) Å (Thu Sep 22 07:35:58 2022)
  • reduced center failed (Thu Sep 22 07:36:03 2022)
  • volume analysis completed in 38.66 sec (Thu Sep 22 07:36:03 2022)
  • compressing channel-001.mrc (Thu Sep 22 07:36:03 2022)
  • waiting for system load (2.80) to calm down, total wait time: 3 min 60 sec (Thu Sep 22 07:36:03 2022)
  • waiting for system load (2.73) to calm down, total wait time: 4 min 5 sec (Thu Sep 22 07:36:09 2022)
  • running now (Thu Sep 22 07:36:15 2022)
  • waiting for system load (2.67) to calm down, total wait time: 4 min 10 sec (Thu Sep 22 07:36:15 2022)
  • waiting for system load (2.62) to calm down, total wait time: 4 min 14 sec (Thu Sep 22 07:36:19 2022)
  • running now (Thu Sep 22 07:36:24 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:36:25 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:36:41 2022)
  • compressing channel-002.obj (Thu Sep 22 07:36:41 2022)
  • waiting for system load (2.54) to calm down, total wait time: 4 min 18 sec (Thu Sep 22 07:36:41 2022)
  • running now (Thu Sep 22 07:36:45 2022)
  • waiting for system load (2.49) to calm down, total wait time: 4 min 21 sec (Thu Sep 22 07:36:45 2022)
  • running now (Thu Sep 22 07:36:48 2022)
  • UCSF Chimera completed in 23.67 sec (Thu Sep 22 07:36:48 2022)
  • analyzing volume (Thu Sep 22 07:36:48 2022)
  • normal CoM (-48.1, -45.9, -142.4) Å (Thu Sep 22 07:36:48 2022)
  • reduced center failed (Thu Sep 22 07:36:48 2022)
  • volume analysis completed in 276.21 msec (Thu Sep 22 07:36:48 2022)
  • compressing channel-002.mrc (Thu Sep 22 07:36:48 2022)
  • waiting for system load (2.53) to calm down, total wait time: 4 min 25 sec (Thu Sep 22 07:36:48 2022)
  • waiting for system load (2.53) to calm down, total wait time: 4 min 29 sec (Thu Sep 22 07:36:52 2022)
  • running now (Thu Sep 22 07:36:56 2022)
  • waiting for system load (2.49) to calm down, total wait time: 4 min 32 sec (Thu Sep 22 07:36:56 2022)
  • running now (Thu Sep 22 07:36:59 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:36:59 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:37:16 2022)
  • compressing channel-003.obj (Thu Sep 22 07:37:16 2022)
  • waiting for system load (2.72) to calm down, total wait time: 4 min 37 sec (Thu Sep 22 07:37:16 2022)
  • waiting for system load (2.66) to calm down, total wait time: 4 min 42 sec (Thu Sep 22 07:37:21 2022)
  • running now (Thu Sep 22 07:37:25 2022)
  • waiting for system load (2.53) to calm down, total wait time: 4 min 46 sec (Thu Sep 22 07:37:25 2022)
  • running now (Thu Sep 22 07:37:29 2022)
  • UCSF Chimera completed in 29.99 sec (Thu Sep 22 07:37:29 2022)
  • analyzing volume (Thu Sep 22 07:37:29 2022)
  • normal CoM (-45.6, -48.0, -140.4) Å (Thu Sep 22 07:37:30 2022)
  • reduced center failed (Thu Sep 22 07:37:30 2022)
  • volume analysis completed in 273.78 msec (Thu Sep 22 07:37:30 2022)
  • compressing channel-003.mrc (Thu Sep 22 07:37:30 2022)
  • waiting for system load (2.49) to calm down, total wait time: 4 min 49 sec (Thu Sep 22 07:37:30 2022)
  • running now (Thu Sep 22 07:37:33 2022)
  • waiting for system load (2.49) to calm down, total wait time: 4 min 53 sec (Thu Sep 22 07:37:33 2022)
  • running now (Thu Sep 22 07:37:36 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:37:37 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:37:53 2022)
  • compressing channel-004.obj (Thu Sep 22 07:37:53 2022)
  • waiting for system load (2.57) to calm down, total wait time: 4 min 56 sec (Thu Sep 22 07:37:53 2022)
  • waiting for system load (2.52) to calm down, total wait time: 5 min 0 sec (Thu Sep 22 07:37:57 2022)
  • running now (Thu Sep 22 07:38:01 2022)
  • waiting for system load (2.48) to calm down, total wait time: 5 min 3 sec (Thu Sep 22 07:38:01 2022)
  • running now (Thu Sep 22 07:38:04 2022)
  • UCSF Chimera completed in 27.61 sec (Thu Sep 22 07:38:04 2022)
  • analyzing volume (Thu Sep 22 07:38:04 2022)
  • normal CoM (-52.5, -43.2, -136.4) Å (Thu Sep 22 07:38:04 2022)
  • reduced center failed (Thu Sep 22 07:38:04 2022)
  • volume analysis completed in 312.66 msec (Thu Sep 22 07:38:04 2022)
  • compressing channel-004.mrc (Thu Sep 22 07:38:04 2022)
  • waiting for system load (2.44) to calm down, total wait time: 5 min 7 sec (Thu Sep 22 07:38:04 2022)
  • running now (Thu Sep 22 07:38:08 2022)
  • waiting for system load (2.44) to calm down, total wait time: 5 min 10 sec (Thu Sep 22 07:38:08 2022)
  • running now (Thu Sep 22 07:38:11 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:38:11 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:38:27 2022)
  • compressing channel-005.obj (Thu Sep 22 07:38:27 2022)
  • waiting for system load (2.54) to calm down, total wait time: 5 min 13 sec (Thu Sep 22 07:38:27 2022)
  • running now (Thu Sep 22 07:38:30 2022)
  • waiting for system load (2.50) to calm down, total wait time: 5 min 17 sec (Thu Sep 22 07:38:30 2022)
  • running now (Thu Sep 22 07:38:34 2022)
  • UCSF Chimera completed in 23.42 sec (Thu Sep 22 07:38:34 2022)
  • analyzing volume (Thu Sep 22 07:38:34 2022)
  • normal CoM (-48.0, -52.1, -143.6) Å (Thu Sep 22 07:38:34 2022)
  • reduced center failed (Thu Sep 22 07:38:34 2022)
  • volume analysis completed in 157.05 msec (Thu Sep 22 07:38:34 2022)
  • compressing channel-005.mrc (Thu Sep 22 07:38:34 2022)
  • waiting for system load (2.46) to calm down, total wait time: 5 min 20 sec (Thu Sep 22 07:38:34 2022)
  • running now (Thu Sep 22 07:38:37 2022)
  • waiting for system load (2.46) to calm down, total wait time: 5 min 23 sec (Thu Sep 22 07:38:37 2022)
  • running now (Thu Sep 22 07:38:41 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:38:41 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:38:57 2022)
  • compressing channel-006.obj (Thu Sep 22 07:38:57 2022)
  • waiting for system load (2.48) to calm down, total wait time: 5 min 27 sec (Thu Sep 22 07:38:57 2022)
  • running now (Thu Sep 22 07:39:01 2022)
  • waiting for system load (2.44) to calm down, total wait time: 5 min 30 sec (Thu Sep 22 07:39:01 2022)
  • running now (Thu Sep 22 07:39:04 2022)
  • UCSF Chimera completed in 23.34 sec (Thu Sep 22 07:39:04 2022)
  • analyzing volume (Thu Sep 22 07:39:04 2022)
  • normal CoM (-47.9, -49.3, -140.9) Å (Thu Sep 22 07:39:04 2022)
  • reduced center failed (Thu Sep 22 07:39:04 2022)
  • volume analysis completed in 276.11 msec (Thu Sep 22 07:39:04 2022)
  • compressing channel-006.mrc (Thu Sep 22 07:39:04 2022)
  • waiting for system load (2.41) to calm down, total wait time: 5 min 33 sec (Thu Sep 22 07:39:04 2022)
  • running now (Thu Sep 22 07:39:07 2022)
  • waiting for system load (2.41) to calm down, total wait time: 5 min 35 sec (Thu Sep 22 07:39:07 2022)
  • running now (Thu Sep 22 07:39:10 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:39:10 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:39:27 2022)
  • compressing channel-007.obj (Thu Sep 22 07:39:27 2022)
  • waiting for system load (2.51) to calm down, total wait time: 5 min 39 sec (Thu Sep 22 07:39:27 2022)
  • running now (Thu Sep 22 07:39:31 2022)
  • waiting for system load (2.47) to calm down, total wait time: 5 min 42 sec (Thu Sep 22 07:39:31 2022)
  • waiting for system load (2.59) to calm down, total wait time: 5 min 46 sec (Thu Sep 22 07:39:34 2022)
  • running now (Thu Sep 22 07:39:38 2022)
  • UCSF Chimera completed in 28.7 sec (Thu Sep 22 07:39:39 2022)
  • analyzing volume (Thu Sep 22 07:39:39 2022)
  • normal CoM (-46.1, -49.2, -143.1) Å (Thu Sep 22 07:39:39 2022)
  • reduced center failed (Thu Sep 22 07:39:39 2022)
  • volume analysis completed in 385.12 msec (Thu Sep 22 07:39:39 2022)
  • compressing channel-007.mrc (Thu Sep 22 07:39:39 2022)
  • waiting for system load (2.71) to calm down, total wait time: 5 min 52 sec (Thu Sep 22 07:39:39 2022)
  • waiting for system load (2.81) to calm down, total wait time: 5 min 58 sec (Thu Sep 22 07:39:44 2022)
  • running now (Thu Sep 22 07:39:50 2022)
  • waiting for system load (2.91) to calm down, total wait time: 6 min 5 sec (Thu Sep 22 07:39:50 2022)
  • waiting for system load (2.99) to calm down, total wait time: 6 min 13 sec (Thu Sep 22 07:39:58 2022)
  • waiting for system load (3.22) to calm down, total wait time: 6 min 24 sec (Thu Sep 22 07:40:06 2022)
  • running now (Thu Sep 22 07:40:17 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:40:17 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:40:39 2022)
  • compressing channel-008.obj (Thu Sep 22 07:40:39 2022)
  • waiting for system load (4.31) to calm down, total wait time: 7 min 0 sec (Thu Sep 22 07:40:39 2022)
  • waiting for system load (4.76) to calm down, total wait time: 7 min 53 sec (Thu Sep 22 07:41:15 2022)
  • waiting for system load (4.97) to calm down, total wait time: 8 min 56 sec (Thu Sep 22 07:42:08 2022)
  • waiting for system load (4.81) to calm down, total wait time: 9 min 51 sec (Thu Sep 22 07:43:11 2022)
  • running now (Thu Sep 22 07:44:06 2022)
  • waiting for system load (3.36) to calm down, total wait time: 10 min 5 sec (Thu Sep 22 07:44:06 2022)
  • waiting for system load (2.92) to calm down, total wait time: 10 min 12 sec (Thu Sep 22 07:44:20 2022)
  • running now (Thu Sep 22 07:44:27 2022)
  • UCSF Chimera completed in 4 min 10 sec (Thu Sep 22 07:44:27 2022)
  • analyzing volume (Thu Sep 22 07:44:27 2022)
  • normal CoM (-51.9, -42.8, -138.2) Å (Thu Sep 22 07:44:27 2022)
  • reduced center failed (Thu Sep 22 07:44:27 2022)
  • volume analysis completed in 346.68 msec (Thu Sep 22 07:44:27 2022)
  • compressing channel-008.mrc (Thu Sep 22 07:44:27 2022)
  • waiting for system load (2.85) to calm down, total wait time: 10 min 18 sec (Thu Sep 22 07:44:27 2022)
  • waiting for system load (2.72) to calm down, total wait time: 10 min 23 sec (Thu Sep 22 07:44:34 2022)
  • running now (Thu Sep 22 07:44:39 2022)
  • waiting for system load (2.66) to calm down, total wait time: 10 min 28 sec (Thu Sep 22 07:44:39 2022)
  • waiting for system load (2.61) to calm down, total wait time: 10 min 32 sec (Thu Sep 22 07:44:44 2022)
  • running now (Thu Sep 22 07:44:48 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:44:48 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:45:05 2022)
  • compressing channel-009.obj (Thu Sep 22 07:45:05 2022)
  • waiting for system load (2.72) to calm down, total wait time: 10 min 38 sec (Thu Sep 22 07:45:05 2022)
  • waiting for system load (2.58) to calm down, total wait time: 10 min 42 sec (Thu Sep 22 07:45:10 2022)
  • running now (Thu Sep 22 07:45:14 2022)
  • waiting for system load (2.53) to calm down, total wait time: 10 min 45 sec (Thu Sep 22 07:45:14 2022)
  • waiting for system load (2.53) to calm down, total wait time: 10 min 49 sec (Thu Sep 22 07:45:18 2022)
  • running now (Thu Sep 22 07:45:22 2022)
  • UCSF Chimera completed in 33.82 sec (Thu Sep 22 07:45:22 2022)
  • analyzing volume (Thu Sep 22 07:45:22 2022)
  • normal CoM (-49.8, -48.8, -143.7) Å (Thu Sep 22 07:45:22 2022)
  • reduced center failed (Thu Sep 22 07:45:22 2022)
  • volume analysis completed in 186.71 msec (Thu Sep 22 07:45:22 2022)
  • compressing channel-009.mrc (Thu Sep 22 07:45:22 2022)
  • waiting for system load (2.49) to calm down, total wait time: 10 min 52 sec (Thu Sep 22 07:45:22 2022)
  • running now (Thu Sep 22 07:45:25 2022)
  • waiting for system load (2.45) to calm down, total wait time: 10 min 55 sec (Thu Sep 22 07:45:25 2022)
  • running now (Thu Sep 22 07:45:29 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:45:29 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:45:46 2022)
  • compressing channel-010.obj (Thu Sep 22 07:45:46 2022)
  • waiting for system load (2.54) to calm down, total wait time: 10 min 59 sec (Thu Sep 22 07:45:46 2022)
  • running now (Thu Sep 22 07:45:50 2022)
  • waiting for system load (2.50) to calm down, total wait time: 11 min 3 sec (Thu Sep 22 07:45:50 2022)
  • running now (Thu Sep 22 07:45:53 2022)
  • UCSF Chimera completed in 24.95 sec (Thu Sep 22 07:45:54 2022)
  • analyzing volume (Thu Sep 22 07:45:54 2022)
  • normal CoM (-47.9, -48.9, -144.3) Å (Thu Sep 22 07:45:54 2022)
  • reduced center failed (Thu Sep 22 07:45:54 2022)
  • volume analysis completed in 275.88 msec (Thu Sep 22 07:45:54 2022)
  • compressing channel-010.mrc (Thu Sep 22 07:45:54 2022)
  • waiting for system load (2.46) to calm down, total wait time: 11 min 6 sec (Thu Sep 22 07:45:54 2022)
  • running now (Thu Sep 22 07:45:57 2022)
  • waiting for system load (2.46) to calm down, total wait time: 11 min 9 sec (Thu Sep 22 07:45:57 2022)
  • running now (Thu Sep 22 07:46:00 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:46:00 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:46:18 2022)
  • compressing channel-011.obj (Thu Sep 22 07:46:18 2022)
  • waiting for system load (2.55) to calm down, total wait time: 11 min 13 sec (Thu Sep 22 07:46:18 2022)
  • waiting for system load (2.51) to calm down, total wait time: 11 min 17 sec (Thu Sep 22 07:46:22 2022)
  • running now (Thu Sep 22 07:46:25 2022)
  • waiting for system load (2.39) to calm down, total wait time: 11 min 19 sec (Thu Sep 22 07:46:25 2022)
  • running now (Thu Sep 22 07:46:28 2022)
  • UCSF Chimera completed in 27.97 sec (Thu Sep 22 07:46:28 2022)
  • analyzing volume (Thu Sep 22 07:46:28 2022)
  • normal CoM (-46.1, -49.1, -144.2) Å (Thu Sep 22 07:46:29 2022)
  • reduced center failed (Thu Sep 22 07:46:29 2022)
  • volume analysis completed in 280.39 msec (Thu Sep 22 07:46:29 2022)
  • compressing channel-011.mrc (Thu Sep 22 07:46:29 2022)
  • waiting for system load (2.52) to calm down, total wait time: 11 min 23 sec (Thu Sep 22 07:46:29 2022)
  • waiting for system load (2.52) to calm down, total wait time: 11 min 27 sec (Thu Sep 22 07:46:32 2022)
  • running now (Thu Sep 22 07:46:36 2022)
  • waiting for system load (2.47) to calm down, total wait time: 11 min 30 sec (Thu Sep 22 07:46:36 2022)
  • running now (Thu Sep 22 07:46:39 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:46:39 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:46:56 2022)
  • compressing channel-012.obj (Thu Sep 22 07:46:56 2022)
  • waiting for system load (2.50) to calm down, total wait time: 11 min 33 sec (Thu Sep 22 07:46:56 2022)
  • running now (Thu Sep 22 07:47:00 2022)
  • waiting for system load (2.46) to calm down, total wait time: 11 min 36 sec (Thu Sep 22 07:47:00 2022)
  • running now (Thu Sep 22 07:47:03 2022)
  • UCSF Chimera completed in 24.13 sec (Thu Sep 22 07:47:03 2022)
  • analyzing volume (Thu Sep 22 07:47:03 2022)
  • normal CoM (-52.3, -45.5, -137.7) Å (Thu Sep 22 07:47:04 2022)
  • reduced center failed (Thu Sep 22 07:47:04 2022)
  • volume analysis completed in 288.54 msec (Thu Sep 22 07:47:04 2022)
  • compressing channel-012.mrc (Thu Sep 22 07:47:04 2022)
  • waiting for system load (2.66) to calm down, total wait time: 11 min 41 sec (Thu Sep 22 07:47:04 2022)
  • waiting for system load (2.69) to calm down, total wait time: 11 min 46 sec (Thu Sep 22 07:47:08 2022)
  • running now (Thu Sep 22 07:47:13 2022)
  • waiting for system load (2.63) to calm down, total wait time: 11 min 51 sec (Thu Sep 22 07:47:13 2022)
  • waiting for system load (2.63) to calm down, total wait time: 11 min 55 sec (Thu Sep 22 07:47:18 2022)
  • running now (Thu Sep 22 07:47:22 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:47:22 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:47:40 2022)
  • compressing channel-013.obj (Thu Sep 22 07:47:40 2022)
  • waiting for system load (2.70) to calm down, total wait time: 11 min 60 sec (Thu Sep 22 07:47:40 2022)
  • waiting for system load (2.65) to calm down, total wait time: 12 min 5 sec (Thu Sep 22 07:47:45 2022)
  • running now (Thu Sep 22 07:47:50 2022)
  • waiting for system load (2.59) to calm down, total wait time: 12 min 9 sec (Thu Sep 22 07:47:50 2022)
  • waiting for system load (2.55) to calm down, total wait time: 12 min 13 sec (Thu Sep 22 07:47:54 2022)
  • running now (Thu Sep 22 07:47:58 2022)
  • UCSF Chimera completed in 35.92 sec (Thu Sep 22 07:47:58 2022)
  • analyzing volume (Thu Sep 22 07:47:58 2022)
  • normal CoM (-48.1, -48.7, -143.3) Å (Thu Sep 22 07:47:58 2022)
  • reduced center failed (Thu Sep 22 07:47:58 2022)
  • volume analysis completed in 188.75 msec (Thu Sep 22 07:47:58 2022)
  • compressing channel-013.mrc (Thu Sep 22 07:47:58 2022)
  • waiting for system load (2.58) to calm down, total wait time: 12 min 17 sec (Thu Sep 22 07:47:58 2022)
  • waiting for system load (2.58) to calm down, total wait time: 12 min 21 sec (Thu Sep 22 07:48:02 2022)
  • running now (Thu Sep 22 07:48:06 2022)
  • waiting for system load (2.54) to calm down, total wait time: 12 min 24 sec (Thu Sep 22 07:48:06 2022)
  • running now (Thu Sep 22 07:48:10 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:48:10 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:48:30 2022)
  • compressing channel-014.obj (Thu Sep 22 07:48:30 2022)
  • waiting for system load (2.71) to calm down, total wait time: 12 min 29 sec (Thu Sep 22 07:48:30 2022)
  • waiting for system load (2.65) to calm down, total wait time: 12 min 34 sec (Thu Sep 22 07:48:35 2022)
  • running now (Thu Sep 22 07:48:39 2022)
  • waiting for system load (2.60) to calm down, total wait time: 12 min 38 sec (Thu Sep 22 07:48:39 2022)
  • waiting for system load (2.55) to calm down, total wait time: 12 min 42 sec (Thu Sep 22 07:48:43 2022)
  • running now (Thu Sep 22 07:48:47 2022)
  • UCSF Chimera completed in 37.36 sec (Thu Sep 22 07:48:48 2022)
  • analyzing volume (Thu Sep 22 07:48:48 2022)
  • normal CoM (-46.9, -40.3, -140.4) Å (Thu Sep 22 07:48:48 2022)
  • reduced center failed (Thu Sep 22 07:48:48 2022)
  • volume analysis completed in 492.72 msec (Thu Sep 22 07:48:48 2022)
  • compressing channel-014.mrc (Thu Sep 22 07:48:48 2022)
  • waiting for system load (2.55) to calm down, total wait time: 12 min 46 sec (Thu Sep 22 07:48:48 2022)
  • waiting for system load (2.51) to calm down, total wait time: 12 min 49 sec (Thu Sep 22 07:48:52 2022)
  • running now (Thu Sep 22 07:48:55 2022)
  • waiting for system load (2.39) to calm down, total wait time: 12 min 52 sec (Thu Sep 22 07:48:55 2022)
  • running now (Thu Sep 22 07:48:58 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:48:58 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:49:17 2022)
  • compressing channel-015.obj (Thu Sep 22 07:49:17 2022)
  • waiting for system load (2.50) to calm down, total wait time: 12 min 56 sec (Thu Sep 22 07:49:17 2022)
  • running now (Thu Sep 22 07:49:20 2022)
  • waiting for system load (2.46) to calm down, total wait time: 12 min 59 sec (Thu Sep 22 07:49:20 2022)
  • running now (Thu Sep 22 07:49:23 2022)
  • UCSF Chimera completed in 25.25 sec (Thu Sep 22 07:49:24 2022)
  • analyzing volume (Thu Sep 22 07:49:24 2022)
  • normal CoM (-45.9, -45.2, -143.6) Å (Thu Sep 22 07:49:24 2022)
  • reduced center failed (Thu Sep 22 07:49:24 2022)
  • volume analysis completed in 281.09 msec (Thu Sep 22 07:49:24 2022)
  • compressing channel-015.mrc (Thu Sep 22 07:49:24 2022)
  • waiting for system load (2.42) to calm down, total wait time: 13 min 2 sec (Thu Sep 22 07:49:24 2022)
  • running now (Thu Sep 22 07:49:27 2022)
  • waiting for system load (2.42) to calm down, total wait time: 13 min 5 sec (Thu Sep 22 07:49:27 2022)
  • running now (Thu Sep 22 07:49:30 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:49:30 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:49:48 2022)
  • compressing channel-016.obj (Thu Sep 22 07:49:48 2022)
  • waiting for system load (2.30) to calm down, total wait time: 13 min 7 sec (Thu Sep 22 07:49:48 2022)
  • running now (Thu Sep 22 07:49:50 2022)
  • waiting for system load (2.36) to calm down, total wait time: 13 min 10 sec (Thu Sep 22 07:49:50 2022)
  • running now (Thu Sep 22 07:49:53 2022)
  • UCSF Chimera completed in 23.65 sec (Thu Sep 22 07:49:54 2022)
  • analyzing volume (Thu Sep 22 07:49:54 2022)
  • normal CoM (-51.7, -41.2, -140.1) Å (Thu Sep 22 07:49:54 2022)
  • reduced center failed (Thu Sep 22 07:49:54 2022)
  • volume analysis completed in 445.09 msec (Thu Sep 22 07:49:54 2022)
  • compressing channel-016.mrc (Thu Sep 22 07:49:54 2022)
  • waiting for system load (2.65) to calm down, total wait time: 13 min 14 sec (Thu Sep 22 07:49:54 2022)
  • waiting for system load (2.76) to calm down, total wait time: 13 min 20 sec (Thu Sep 22 07:49:59 2022)
  • running now (Thu Sep 22 07:50:04 2022)
  • waiting for system load (2.86) to calm down, total wait time: 13 min 26 sec (Thu Sep 22 07:50:04 2022)
  • waiting for system load (2.95) to calm down, total wait time: 13 min 34 sec (Thu Sep 22 07:50:11 2022)
  • waiting for system load (3.03) to calm down, total wait time: 13 min 42 sec (Thu Sep 22 07:50:18 2022)
  • running now (Thu Sep 22 07:50:27 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:50:27 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:50:50 2022)
  • compressing channel-017.obj (Thu Sep 22 07:50:50 2022)
  • waiting for system load (4.09) to calm down, total wait time: 14 min 12 sec (Thu Sep 22 07:50:50 2022)
  • waiting for system load (4.05) to calm down, total wait time: 14 min 40 sec (Thu Sep 22 07:51:20 2022)
  • waiting for system load (4.03) to calm down, total wait time: 15 min 8 sec (Thu Sep 22 07:51:48 2022)
  • waiting for system load (4.02) to calm down, total wait time: 15 min 36 sec (Thu Sep 22 07:52:16 2022)
  • waiting for system load (4.09) to calm down, total wait time: 16 min 6 sec (Thu Sep 22 07:52:44 2022)
  • running now (Thu Sep 22 07:53:13 2022)
  • waiting for system load (3.66) to calm down, total wait time: 16 min 25 sec (Thu Sep 22 07:53:13 2022)
  • waiting for system load (3.22) to calm down, total wait time: 16 min 36 sec (Thu Sep 22 07:53:32 2022)
  • running now (Thu Sep 22 07:53:43 2022)
  • UCSF Chimera completed in 3 min 17 sec (Thu Sep 22 07:53:44 2022)
  • analyzing volume (Thu Sep 22 07:53:44 2022)
  • normal CoM (-50.9, -49.2, -146.4) Å (Thu Sep 22 07:53:44 2022)
  • reduced center failed (Thu Sep 22 07:53:44 2022)
  • volume analysis completed in 158.59 msec (Thu Sep 22 07:53:44 2022)
  • compressing channel-017.mrc (Thu Sep 22 07:53:44 2022)
  • waiting for system load (2.95) to calm down, total wait time: 16 min 43 sec (Thu Sep 22 07:53:44 2022)
  • waiting for system load (2.87) to calm down, total wait time: 16 min 50 sec (Thu Sep 22 07:53:51 2022)
  • running now (Thu Sep 22 07:53:58 2022)
  • waiting for system load (2.80) to calm down, total wait time: 16 min 56 sec (Thu Sep 22 07:53:58 2022)
  • waiting for system load (2.76) to calm down, total wait time: 17 min 1 sec (Thu Sep 22 07:54:04 2022)
  • running now (Thu Sep 22 07:54:09 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:54:10 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:54:29 2022)
  • compressing channel-018.obj (Thu Sep 22 07:54:29 2022)
  • waiting for system load (2.78) to calm down, total wait time: 17 min 7 sec (Thu Sep 22 07:54:29 2022)
  • waiting for system load (2.72) to calm down, total wait time: 17 min 12 sec (Thu Sep 22 07:54:34 2022)
  • running now (Thu Sep 22 07:54:40 2022)
  • waiting for system load (2.66) to calm down, total wait time: 17 min 17 sec (Thu Sep 22 07:54:40 2022)
  • waiting for system load (2.61) to calm down, total wait time: 17 min 21 sec (Thu Sep 22 07:54:44 2022)
  • running now (Thu Sep 22 07:54:49 2022)
  • UCSF Chimera completed in 39.34 sec (Thu Sep 22 07:54:49 2022)
  • analyzing volume (Thu Sep 22 07:54:49 2022)
  • normal CoM (-48.0, -45.5, -142.9) Å (Thu Sep 22 07:54:49 2022)
  • reduced center failed (Thu Sep 22 07:54:49 2022)
  • volume analysis completed in 296.36 msec (Thu Sep 22 07:54:49 2022)
  • compressing channel-018.mrc (Thu Sep 22 07:54:49 2022)
  • waiting for system load (2.56) to calm down, total wait time: 17 min 25 sec (Thu Sep 22 07:54:49 2022)
  • waiting for system load (2.56) to calm down, total wait time: 17 min 29 sec (Thu Sep 22 07:54:53 2022)
  • running now (Thu Sep 22 07:54:57 2022)
  • waiting for system load (2.52) to calm down, total wait time: 17 min 33 sec (Thu Sep 22 07:54:57 2022)
  • running now (Thu Sep 22 07:55:01 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:55:01 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:55:19 2022)
  • compressing channel-019.obj (Thu Sep 22 07:55:19 2022)
  • waiting for system load (2.62) to calm down, total wait time: 17 min 37 sec (Thu Sep 22 07:55:19 2022)
  • waiting for system load (2.57) to calm down, total wait time: 17 min 41 sec (Thu Sep 22 07:55:24 2022)
  • running now (Thu Sep 22 07:55:28 2022)
  • waiting for system load (2.57) to calm down, total wait time: 17 min 45 sec (Thu Sep 22 07:55:28 2022)
  • running now (Thu Sep 22 07:55:32 2022)
  • UCSF Chimera completed in 31.19 sec (Thu Sep 22 07:55:32 2022)
  • analyzing volume (Thu Sep 22 07:55:32 2022)
  • normal CoM (-45.9, -47.8, -140.7) Å (Thu Sep 22 07:55:32 2022)
  • reduced center failed (Thu Sep 22 07:55:32 2022)
  • volume analysis completed in 281.65 msec (Thu Sep 22 07:55:32 2022)
  • compressing channel-019.mrc (Thu Sep 22 07:55:32 2022)
  • waiting for system load (2.45) to calm down, total wait time: 17 min 48 sec (Thu Sep 22 07:55:32 2022)
  • running now (Thu Sep 22 07:55:35 2022)
  • waiting for system load (2.33) to calm down, total wait time: 17 min 50 sec (Thu Sep 22 07:55:35 2022)
  • running now (Thu Sep 22 07:55:38 2022)
  • imaging volume (download mrc) with UCSF Chimera (Thu Sep 22 07:55:38 2022)
  • UCSF Chimera created Jmol compatible file (Thu Sep 22 07:55:58 2022)
  • compressing channel-020.obj (Thu Sep 22 07:55:58 2022)
  • waiting for system load (2.52) to calm down, total wait time: 17 min 54 sec (Thu Sep 22 07:55:58 2022)
  • running now (Thu Sep 22 07:56:01 2022)
  • waiting for system load (2.48) to calm down, total wait time: 17 min 57 sec (Thu Sep 22 07:56:01 2022)
  • running now (Thu Sep 22 07:56:04 2022)
  • UCSF Chimera completed in 26.88 sec (Thu Sep 22 07:56:05 2022)
  • analyzing volume (Thu Sep 22 07:56:05 2022)
  • normal CoM (-52.2, -43.3, -136.2) Å (Thu Sep 22 07:56:05 2022)
  • reduced center failed (Thu Sep 22 07:56:05 2022)
  • volume analysis completed in 289.93 msec (Thu Sep 22 07:56:05 2022)
  • compressing channel-020.mrc (Thu Sep 22 07:56:05 2022)
  • waiting for system load (2.44) to calm down, total wait time: 18 min 0 sec (Thu Sep 22 07:56:05 2022)
  • running now (Thu Sep 22 07:56:08 2022)
  • waiting for system load (2.44) to calm down, total wait time: 18 min 4 sec (Thu Sep 22 07:56:08 2022)
  • running now (Thu Sep 22 07:56:11 2022)
  • tarring file list (Thu Sep 22 07:56:11 2022)
  • waiting for system load (2.41) to calm down, total wait time: 18 min 6 sec (Thu Sep 22 07:56:11 2022)
  • running now (Thu Sep 22 07:56:14 2022)
  • waiting for system load (2.37) to calm down, total wait time: 18 min 9 sec (Thu Sep 22 07:56:14 2022)
  • running now (Thu Sep 22 07:56:17 2022)
  • compressing channel-001.mrc (Thu Sep 22 07:56:17 2022)
  • waiting for system load (2.37) to calm down, total wait time: 18 min 12 sec (Thu Sep 22 07:56:17 2022)
  • running now (Thu Sep 22 07:56:20 2022)
  • compressing channel-002.mrc (Thu Sep 22 07:56:20 2022)
  • waiting for system load (2.34) to calm down, total wait time: 18 min 14 sec (Thu Sep 22 07:56:20 2022)
  • running now (Thu Sep 22 07:56:22 2022)
  • compressing channel-003.mrc (Thu Sep 22 07:56:22 2022)
  • waiting for system load (2.34) to calm down, total wait time: 18 min 17 sec (Thu Sep 22 07:56:22 2022)
  • running now (Thu Sep 22 07:56:25 2022)
  • compressing channel-004.mrc (Thu Sep 22 07:56:25 2022)
  • waiting for system load (2.32) to calm down, total wait time: 18 min 19 sec (Thu Sep 22 07:56:25 2022)
  • running now (Thu Sep 22 07:56:27 2022)
  • compressing channel-005.mrc (Thu Sep 22 07:56:27 2022)
  • waiting for system load (2.32) to calm down, total wait time: 18 min 22 sec (Thu Sep 22 07:56:27 2022)
  • running now (Thu Sep 22 07:56:29 2022)
  • compressing channel-006.mrc (Thu Sep 22 07:56:29 2022)
  • waiting for system load (2.29) to calm down, total wait time: 18 min 24 sec (Thu Sep 22 07:56:29 2022)
  • running now (Thu Sep 22 07:56:32 2022)
  • compressing channel-007.mrc (Thu Sep 22 07:56:32 2022)
  • waiting for system load (2.29) to calm down, total wait time: 18 min 26 sec (Thu Sep 22 07:56:32 2022)
  • running now (Thu Sep 22 07:56:34 2022)
  • compressing channel-008.mrc (Thu Sep 22 07:56:34 2022)
  • waiting for system load (2.27) to calm down, total wait time: 18 min 28 sec (Thu Sep 22 07:56:34 2022)
  • running now (Thu Sep 22 07:56:36 2022)
  • compressing channel-009.mrc (Thu Sep 22 07:56:36 2022)
  • waiting for system load (2.27) to calm down, total wait time: 18 min 30 sec (Thu Sep 22 07:56:36 2022)
  • running now (Thu Sep 22 07:56:38 2022)
  • compressing channel-010.mrc (Thu Sep 22 07:56:38 2022)
  • waiting for system load (2.27) to calm down, total wait time: 18 min 33 sec (Thu Sep 22 07:56:38 2022)
  • running now (Thu Sep 22 07:56:40 2022)
  • compressing channel-011.mrc (Thu Sep 22 07:56:40 2022)
  • waiting for system load (2.25) to calm down, total wait time: 18 min 35 sec (Thu Sep 22 07:56:40 2022)
  • running now (Thu Sep 22 07:56:42 2022)
  • compressing channel-012.mrc (Thu Sep 22 07:56:42 2022)
  • waiting for system load (2.25) to calm down, total wait time: 18 min 37 sec (Thu Sep 22 07:56:42 2022)
  • running now (Thu Sep 22 07:56:44 2022)
  • compressing channel-013.mrc (Thu Sep 22 07:56:44 2022)
  • waiting for system load (2.23) to calm down, total wait time: 18 min 39 sec (Thu Sep 22 07:56:44 2022)
  • running now (Thu Sep 22 07:56:46 2022)
  • compressing channel-014.mrc (Thu Sep 22 07:56:46 2022)
  • waiting for system load (2.23) to calm down, total wait time: 18 min 41 sec (Thu Sep 22 07:56:46 2022)
  • running now (Thu Sep 22 07:56:48 2022)
  • compressing channel-015.mrc (Thu Sep 22 07:56:48 2022)
  • waiting for system load (2.21) to calm down, total wait time: 18 min 42 sec (Thu Sep 22 07:56:48 2022)
  • running now (Thu Sep 22 07:56:50 2022)
  • compressing channel-016.mrc (Thu Sep 22 07:56:50 2022)
  • waiting for system load (2.21) to calm down, total wait time: 18 min 44 sec (Thu Sep 22 07:56:50 2022)
  • running now (Thu Sep 22 07:56:52 2022)
  • compressing channel-017.mrc (Thu Sep 22 07:56:52 2022)
  • waiting for system load (2.21) to calm down, total wait time: 18 min 46 sec (Thu Sep 22 07:56:52 2022)
  • running now (Thu Sep 22 07:56:54 2022)
  • compressing channel-018.mrc (Thu Sep 22 07:56:54 2022)
  • waiting for system load (2.19) to calm down, total wait time: 18 min 48 sec (Thu Sep 22 07:56:54 2022)
  • running now (Thu Sep 22 07:56:56 2022)
  • compressing channel-019.mrc (Thu Sep 22 07:56:56 2022)
  • waiting for system load (2.19) to calm down, total wait time: 18 min 50 sec (Thu Sep 22 07:56:56 2022)
  • running now (Thu Sep 22 07:56:58 2022)
  • compressing channel-020.mrc (Thu Sep 22 07:56:58 2022)
  • waiting for system load (2.19) to calm down, total wait time: 18 min 52 sec (Thu Sep 22 07:56:58 2022)
  • running now (Thu Sep 22 07:56:59 2022)
  • FINISHED (Thu Sep 22 07:56:59 2022)

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Log file display

Show last lines of log file 
Terminal display
		
Message: running now 
Message: compressing channel-015.mrc 
Message: waiting for system load (2.21) to calm down, total wait time: 18 min 42 sec 
Message: running now 
Message: compressing channel-016.mrc 
Message: waiting for system load (2.21) to calm down, total wait time: 18 min 44 sec 
Message: running now 
Message: compressing channel-017.mrc 
Message: waiting for system load (2.21) to calm down, total wait time: 18 min 46 sec 
Message: running now 
Message: compressing channel-018.mrc 
Message: waiting for system load (2.19) to calm down, total wait time: 18 min 48 sec 
Message: running now 
Message: compressing channel-019.mrc 
Message: waiting for system load (2.19) to calm down, total wait time: 18 min 50 sec 
Message: running now 
Message: compressing channel-020.mrc 
Message: waiting for system load (2.19) to calm down, total wait time: 18 min 52 sec 
Message: running now 
Message: FINISHED 
		


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
Download source code
Help
Site news and updates
If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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