3v Running Log for JobId '2023.may25.110'

Program is still running, progress is shown below

Show unfinished results

  • host ip address=88.180.11.4 (Fri May 26 01:35:20 2023)
  • converting pdb into xyzr (Fri May 26 01:35:21 2023)
  • completed conversion of PDB file: 2023.may25.110.pdb (size: 1119k) (Fri May 26 01:35:34 2023)
  • converted 35808 atoms of 35808 atoms (Fri May 26 01:35:34 2023)
  • found 35808 atoms in pdb (Fri May 26 01:35:34 2023)
  • running 3v all channel program (Fri May 26 01:35:34 2023)
  • created 2 channel files (Fri May 26 01:35:43 2023)
  • Download MRC files: 1 2 (Fri May 26 01:35:43 2023)
  • imaging volume (download mrc) with UCSF Chimera (Fri May 26 01:35:43 2023)
  • UCSF Chimera created Jmol compatible file (Fri May 26 01:36:02 2023)
  • compressing channel-001.obj (Fri May 26 01:36:02 2023)
  • UCSF Chimera completed in 20.07 sec (Fri May 26 01:36:03 2023)
  • analyzing volume (Fri May 26 01:36:03 2023)
  • normal CoM (-28.2, -35.4, -28.3) Å (Fri May 26 01:36:06 2023)
  • reduced center failed (Fri May 26 01:36:06 2023)
  • volume analysis completed in 2.36 sec (Fri May 26 01:36:06 2023)
  • compressing channel-001.mrc (Fri May 26 01:36:06 2023)
  • imaging volume (download mrc) with UCSF Chimera (Fri May 26 01:36:06 2023)
  • UCSF Chimera created Jmol compatible file (Fri May 26 01:36:21 2023)
  • compressing channel-002.obj (Fri May 26 01:36:21 2023)
  • UCSF Chimera completed in 14.93 sec (Fri May 26 01:36:21 2023)
  • analyzing volume (Fri May 26 01:36:21 2023)
  • normal CoM (-63.5, -66.2, -55.7) Å (Fri May 26 01:36:21 2023)
  • reduced center failed (Fri May 26 01:36:21 2023)
  • volume analysis completed in 54.02 msec (Fri May 26 01:36:21 2023)
  • compressing channel-002.mrc (Fri May 26 01:36:21 2023)
  • tarring file list (Fri May 26 01:36:21 2023)
  • compressing channel-001.mrc (Fri May 26 01:36:21 2023)
  • compressing channel-002.mrc (Fri May 26 01:36:21 2023)
  • FINISHED (Fri May 26 01:36:21 2023)

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Log file display

Show last lines of log file  
Terminal display
		
Message: reduced center failed 
Message: volume analysis completed in 2.36 sec 
Message: compressing channel-001.mrc 
Message: imaging volume (d ... 
himera/'>UCSF Chimera 
/var/www/html/py/appionlib/apChimSnapshot.py 
Message: UCSF Chimera created Jmol compatible file 
Message: compressing channel-002.obj 
Message: UCSF Chimera completed in 14.93 sec 
OBJFILE /var/www/html/3vee/output/2023/may25/110/channel-002.obj.gz 
Message: analyzing volume 
Message: normal CoM (-63.5, -66.2, -55.7) Å 
Message: reduced center failed 
Message: volume analysis completed in 54.02 msec 
Message: compressing channel-002.mrc 
Message: tarring file list 
Message: compressing channel-001.mrc 
Message: compressing channel-002.mrc 
Message: FINISHED


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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