3v Running Log for JobId '2023.may26.c73'

Program is still running, progress is shown below

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  • host ip address=169.159.129.109 (Fri May 26 03:31:14 2023)
  • converting pdb into xyzr (Fri May 26 03:31:14 2023)
  • completed conversion of PDB file: 2023.may26.c73.pdb (size: 85k) (Fri May 26 03:31:15 2023)
  • converted 2712 atoms of 2712 atoms (Fri May 26 03:31:15 2023)
  • found 2712 atoms in pdb (Fri May 26 03:31:15 2023)
  • running 3v all channel program (Fri May 26 03:31:15 2023)
  • created 2 channel files (Fri May 26 03:31:16 2023)
  • Download MRC files: 1 2 (Fri May 26 03:31:16 2023)
  • imaging volume (download mrc) with UCSF Chimera (Fri May 26 03:31:16 2023)
  • UCSF Chimera created Jmol compatible file (Fri May 26 03:31:21 2023)
  • compressing channel-001.obj (Fri May 26 03:31:21 2023)
  • UCSF Chimera completed in 4.25 sec (Fri May 26 03:31:21 2023)
  • analyzing volume (Fri May 26 03:31:21 2023)
  • normal CoM (-37.1, -25.1, -28.5) Å (Fri May 26 03:31:21 2023)
  • volume analysis completed in 43.24 msec (Fri May 26 03:31:21 2023)
  • compressing channel-001.mrc (Fri May 26 03:31:21 2023)
  • imaging volume (download mrc) with UCSF Chimera (Fri May 26 03:31:21 2023)
  • UCSF Chimera created Jmol compatible file (Fri May 26 03:31:25 2023)
  • compressing channel-002.obj (Fri May 26 03:31:25 2023)
  • UCSF Chimera completed in 4.12 sec (Fri May 26 03:31:25 2023)
  • analyzing volume (Fri May 26 03:31:25 2023)
  • normal CoM (-36.1, -34.9, -31.0) Å (Fri May 26 03:31:25 2023)
  • reduced center failed (Fri May 26 03:31:25 2023)
  • volume analysis completed in 44.15 msec (Fri May 26 03:31:25 2023)
  • compressing channel-002.mrc (Fri May 26 03:31:25 2023)
  • tarring file list (Fri May 26 03:31:25 2023)
  • compressing channel-001.mrc (Fri May 26 03:31:25 2023)
  • compressing channel-002.mrc (Fri May 26 03:31:25 2023)
  • FINISHED (Fri May 26 03:31:25 2023)

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Log file display

Show last lines of log file  
Terminal display
		
Message: normal CoM (-37.1, -25.1, -28.5) Å 
Message: volume analysis completed in 43.24 msec 
Message: compressing channel-001.mrc 
Message: imaging volume (d ... 
himera/'>UCSF Chimera 
/var/www/html/py/appionlib/apChimSnapshot.py 
Message: UCSF Chimera created Jmol compatible file 
Message: compressing channel-002.obj 
Message: UCSF Chimera completed in 4.12 sec 
OBJFILE /var/www/html/3vee/output/2023/may26/c73/channel-002.obj.gz 
Message: analyzing volume 
Message: normal CoM (-36.1, -34.9, -31.0) Å 
Message: reduced center failed 
Message: volume analysis completed in 44.15 msec 
Message: compressing channel-002.mrc 
Message: tarring file list 
Message: compressing channel-001.mrc 
Message: compressing channel-002.mrc 
Message: FINISHED


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
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If you find this useful or want more functionality please contact Neil <vossman77 [at] gmail [dot] com>
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