Volume Probe Range

Input structure:
Upload PDB file to process:

Enter PDB ID to process:
 

Use biological unit?

Use hetero atoms?

Grid resolution:
crude low medium high

PyMOL compatible
Create Water PDB
Share your results

Minimum probe radius:


Maximum probe radius:


Probe radius step size:






PRESET EXAMPLES:   


Recent runs



Job id: 2017.jun01.c2c PDB id: 4GZA  


Job id: 2017.may21.3c7  


Job id: 2017.may08.5dd PDB id: 2pvr  

Volume Probe Range – this program calculates the volume of your macromolecule of interest. By rolling a virtual probe on the surface of your macromolecule a volume is calculated


rolling probe


Citation:
'3V: cavity, channel and cleft volume calculator and extractor' (free text)
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562
by Neil R. Voss and Mark Gerstein
Download source code
Help
Site news and updates
If you find this useful or want more functionality please contact Neil <vossman77 [at] yahoo.com>
back to main page